Solanum stenotomum: 125854372
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Entry
125854372 CDS
T08385
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125854372
03009 Ribosome biogenesis [BR:
sstn03009
]
125854372
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125854372
Spliceosome [BR:
sstn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125854372
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Helicases
125854372
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
125854372
NCBI-ProteinID:
XP_049389859
LinkDB
All DBs
Position
2:complement(1105689..1112499)
Genome browser
AA seq
745 aa
AA seq
DB search
MATDFSFEQPSDEEVEYEENDDSEEEEHEVDEDNEDADPKPRTNKKPQSPWDFSSYSESV
ADEHSHRRTTSIDFKISKARQQLSAPIAKPIEEDSDSDDSEPHRQEEYRPDDEDGDDDVD
THVAEKKPFFASSEGVTFHANSFIELHISRPLLRACEALGYSKPTPIQAACIPLALTGRD
ICGSAITGSGKTAAFALPTLERLLYRPKNRPAIRVLILTPTRELAVQVHSMIGKLAQFMP
DVRCCLVVGGLSTKVQEAALRTMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL
LELGFSAEIRELVRLCPKRRQTMLFSATMTEEVDELINLSLNKPLRLSADPSTKRPATLT
EEVVRIRRMREGNHEAVLLALCTKTFTSKVIVFSGTKLAAHRLKIIFGLLGFKAAELHGN
LTQAQRLDALELFRRQEVDFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTAR
AGREGYAVTFVTDNDRSLLKAIVKRAGSRLKSRIVAEQSITKWAQVIEQLEDQVSAVMQE
EREEMALRKAEMEANKAENMIAHRDEIYSRPKRTWFVTEKEKKLVQKAAKENAAAKENGS
ESKVMSAEHAEDLKMKEKRKREREKNLPRKKRRKLEAAREQLEDEDDLDDGKDKTKKEKS
GISLVDLAYRRAKAVKAVNKAVDAGKIVRKAGNKPKPKSRASESKTEEMQDLFQNDMSER
KQRKSLHAGGKKKSSFKSKSRYKRR
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgatttctcgtttgaacaacccagcgatgaagaagttgaatatgaggagaat
gatgacagtgaagaagaagaacatgaagtggatgaagataatgaagatgccgaccccaaa
cctcgaacgaataagaagccgcaatctccatgggacttctcttcttactctgaatccgtc
gctgatgaacacagccaccgtagaacaacttcaattgatttcaaaatatcaaaagctcgt
caacaactctctgctcctatagctaaaccaatcgaggaagattccgattccgacgattca
gaacctcaccgccaggaagagtacagacccgatgatgaggatggtgatgatgatgtagat
actcatgttgctgaaaagaagccattttttgcctcatcagaaggagttacatttcatgca
aattcgtttattgagctccatatctcaaggccgttgcttcgggcttgtgaagcattgggt
tacagtaagcctaccccaattcaggcggcctgcattccattggctttaaccggtcgagat
atatgtggtagtgctataacaggatctggaaagacagctgcttttgccttaccaacactg
gagagactgttgtaccgtccaaaaaataggcctgcaattagagttcttattctaactcca
acaagagagttggctgttcaggttcatagtatgataggtaaacttgcccaatttatgcca
gatgtcagatgttgtctggttgttggtggtctgtcaaccaaggtgcaagaggcagccttg
agaacaatgcctgatattgtcgtggccactccaggacgtatgatagatcatctacgaaac
tccatgtcagttgatttggatgatcttgcagtattgattcttgatgaggccgatcgtcta
ctggagctgggtttcagtgctgaaattcgtgagctggttagattgtgtccaaagcggaga
cagaccatgctgttttctgcgacaatgactgaggaagttgatgagctcatcaatctctca
ctgaataaacccttgcgcctgtcagctgatccatctacgaaacggcctgcaacactgact
gaagaggtagttagaatacggcgcatgcgtgaaggaaatcatgaagctgttctccttgca
ttgtgcaccaagaccttcacttccaaagtgattgttttcagtggtacaaagctagcagct
catcggttgaaaattatatttggtttacttggtttcaaagcagctgagctacatggaaat
cttacgcaagcgcagcgtctagatgctttggaacttttcagaagacaggaagtggatttt
ttgattgcaaccgatgttgcagctcgtggacttgacattattggtgttcaaactgttata
aattttgcgtgcccacgtgatcttactagttacgttcatcgagtgggtcggacagctaga
gctggtagagaaggttatgccgttacctttgtcacagataatgataggtctcttctaaaa
gccattgttaaacgagctggttcaaggctaaagagtcgaattgtagcagaacaatctata
actaagtgggcacaagtgattgaacagcttgaggatcaagtgtctgcagttatgcaagaa
gagagggaagagatggcactaagaaaagctgaaatggaagcaaataaggcagagaatatg
attgcccacagggatgagatttattcacgtcctaaaagaacatggtttgtcacagaaaag
gagaaaaagctagttcaaaaggcagcaaaggagaacgcagcagccaaagaaaatggttct
gagagcaaggtaatgagtgccgagcatgcagaagacctgaagatgaaggaaaagaggaag
cgagaacgagagaaaaatctgccgaggaagaaaagaaggaagttggaggctgctcgagag
caattagaagatgaagatgacttagatgatggcaaagacaaaacaaagaaagagaaatct
ggaatttccctagttgatcttgcttatcgtcgtgcaaaagcagtcaaggctgtgaacaag
gcagttgatgctggcaagattgttaggaaggctggaaataaaccaaaaccgaaaagcaga
gcatctgaatccaagacagaggaaatgcaggatctttttcaaaatgatatgagtgagaga
aaacaaagaaaatcacttcatgccggtggaaagaaaaagtcctcattcaagagcaagtca
cggtacaagaggaggtga
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