Solanum stenotomum: 125854471
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Entry
125854471 CDS
T08385
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125854471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125854471
03036 Chromosome and associated proteins [BR:
sstn03036
]
125854471
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125854471
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
125854471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
125854471
NCBI-ProteinID:
XP_049389979
LinkDB
All DBs
Position
2:complement(71843367..71857042)
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AA seq
991 aa
AA seq
DB search
MFGSTNAFGQSSSSPFGSQSVFGQTSNNPFAPKPFGSTNPFGSQSGGSFFGSTSTGVFGT
PQSSSPLGSTSVFGASSSPAFGASTTPTFGSSSSAFGSSSVFGQKPAFGGFGSSSAQTSP
FGSSFQQSQPAFGSGLFGSSTPFGTSSQPAFGTPSTPTFGSSTTPAFGATMSTPAFGTSS
TPAFGSTPNPSFGNTSSPFGVTNPPVFASGTPSFGTTTASAFGSTSTPAFGTPSAPSFSF
GSSPAFGQSTSAFGSSPFGTSTSTFGAPSSAFGAQTSATSFGNPSFGQSAVGGQRGGTRV
AAYQATPDADNPSGTQPAKLESISAMPVYKEKSHEELRWEDYQLGDKGGPAPAGQSTSGM
NFGSSAFASSTTSPFGQSSANPFTSTTSSNPFAPKPSTFSTSGFGVPTTPAFNSSAFPSS
NTSNPFGSTSSTSPSLFGSTSAFGQSTSPTLFGSSSASGFGSSTSIFGSSPAQATAPAFG
PSLSFGNTQSSPLFQSTAPPFGQTSSAFGQTASSFAQTTPAFGQSNLFSTPSTGFGGNLF
SSAPLLNTSSTMGFGQTTPSLSTPFQLTQPSQSSTFGFNNFGQTQGAAASGFGGTPSLFS
QPPAIQNSVVAQPAVVTNPFGTLPAMPQMSIGRTGTSSSIQYGISSLPVVDKPVPVRISS
LLTSRHLSQRRLRLPARKYHPKTEGTKVPFFSDDDETPSTPKADALFVPRENPRALVIRP
LDQWPSRGGLEKVSPSKHMSSPAHENGKTAEVVCAPVNEASAKDKNKDLVENGFDKEGLD
STKLNQKPNGLHEGQHLRKGGSSITLTGHRAGEAAIVYEHGADIEALMPKLLHSDYYTEP
RIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFMGETDVRRLDLESLIQFNNREVIVYM
DESKKPPVGQGLNKPAEVTLLNIKCFDKKTGQQYTEGPRIEKYKEMLKRKAGDQGAEFVS
YDPVKGEWKFRVQHFSKYWLHEDECGEYSDA
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggtccacgaatgctttcgggcagtcatcttctagcccatttgggtcacaatca
gttttcgggcagacaagtaataacccatttgctcccaaaccttttggtagtacaaatcct
tttggttctcaatcaggtggttccttttttggtagcacttccactggagtgtttggaaca
ccccaatcttcttcacctctggggtctacatcagtttttggtgcatcatcctcacctgca
tttggagcttctactactccaacttttggcagttcatcatcagcatttgggagttcatct
gtattcgggcaaaagccagcttttggtggctttggttcaagtagtgcccaaacaagtcca
ttcggcagctcgtttcaacaatcacagccggcatttgggagtggtctattcggctcatct
acaccttttggtacctcaagtcaacctgcatttggtactccaagtaccccgacatttggt
tcatcaaccacccctgcttttggtgccacgatgagtacaccagcatttggtacatcaagt
actccagcctttggttctacacctaatccttccttcggcaatacaagtagcccatttggt
gtgacaaatcctcctgtttttgcatctggcaccccgtcctttggtactaccactgcttct
gcctttggttccacatcaactcctgcttttggtactccgagtgctccttcgtttagtttt
ggatcctctcctgcatttggccaatcaacatctgcttttggcagtagcccgtttggcaca
tcaacgtcaacttttggtgctccaagttctgcctttggagcccaaacttctgcgacatct
ttcggaaaccctagttttggacaatctgctgttggtggtcaacggggcggaacacgagtt
gctgcttaccaggcaacacctgatgcagataatcccagtggtacccagcctgcgaaacta
gagtctatttcggccatgccagtttacaaagaaaagagccatgaagaacttaggtgggag
gattaccagttgggagacaagggaggtcctgctcctgcgggtcagtcaactagtggaatg
aattttggaagctcagccttcgcatcatcaacaacttccccatttggccaatcatctgca
aatccatttacgtccactacatcttccaacccttttgcccccaaaccatccacattcagt
acttcaggttttggagtcccaactactccggcttttaattcctctgcctttccaagctca
aatacatctaatccttttggctctacatcctccacttccccttccttatttggatcaact
tcagcttttggacaaagtacatctcccaccctctttggatcatctagtgcttcgggtttt
ggatcatcaacatcaatttttggctcctcgccagctcaggctactgctccagcatttggt
cctagcttaagctttggtaacactcaatcatctccattattccaatcaactgcccctcca
ttcggacagacgagctcggcctttggacagaccgcatcatcttttgcccagactacacca
gcttttggtcaatccaatttgtttagtacaccttctactggctttggtggtaacttgttt
tcaagtgcaccactgctaaatacaagcagtacaatgggatttggccaaacaacaccctct
ctatcgactccttttcaactgactcagccttctcagagttctacttttgggttcaataac
tttggtcagacacaaggagctgctgcaagtggttttggtggcactcccagccttttcagt
cagccgccagctatccaaaactcagttgtcgcacaacctgcagttgttactaatccattt
ggaactttaccagcgatgcctcagatgtcaattggtcgtactggcacttcttcttctata
cagtatgggatttctagtttaccggtggttgacaaacctgttcctgtcaggatatcatca
ttactaacttctcgacacctttctcaaagacggcttaggttgccagcaaggaaatatcat
cctaaaactgaggggactaaggtaccgttctttagtgacgatgatgaaacaccaagcacg
cctaaggcagatgcattgtttgttcccagagagaacccaagagctttagtaattcgtcca
ttggaccaatggccttcgagaggtggtttggagaaagtatccccatcaaagcacatgtct
tccccagcgcatgagaatggtaaaactgctgaagttgtttgtgctccagttaacgaggcc
agtgcaaaagataaaaacaaagatctggttgagaatggctttgataaagagggtctcgat
agtaccaaactgaaccagaaacctaatggtctccacgaagggcaacatctccgaaaagga
ggatcttccattacccttactggccatcgagctggtgaggcagcaattgtttatgaacat
ggggctgacattgaggctctgatgccaaagctcttgcattctgattattacacagagcca
cggattcaggaattggcagccaaagaaagagctgaacctgggttctgtcgccgtgtgaag
gattttgtggttggaagacatgggtacggtagcattaagttcatgggggaaacagatgtt
cgtcgtcttgatcttgagtctctaattcagtttaacaatcgagaggtgatagtctatatg
gatgaaagtaagaaacctcctgttggccaaggtcttaacaagcccgctgaggtgacactt
ctcaacataaaatgtttcgataagaagactggacaacagtatacagagggtcctagaatc
gagaaatataaagaaatgcttaagaggaaggcaggagatcaaggtgctgaatttgtgtca
tatgatcctgttaaaggagaatggaagttcagggttcagcatttcagcaaatattggctt
cacgaagatgaatgtggcgaatattctgatgcctag
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