Solanum stenotomum: 125854477
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Entry
125854477 CDS
T08385
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
125854477
Enzymes [BR:
sstn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
125854477
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarbopepD_reg_2
CarboxypepD_reg
Endotoxin_C
Motif
Other DBs
NCBI-GeneID:
125854477
NCBI-ProteinID:
XP_049389989
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Position
2:6401276..6421966
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AA seq
668 aa
AA seq
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MTAPGVQLHLPDDHHVVMDNGILQVTLSVPDGIVTGITYNGVDNLLEVLNDETNRGYWDV
VWSSTGTTGTTGTFERLICTTYKVILETDDQIELSFSRTWDVSLQDEIIPLNIDKRFIML
KGSSGFYSYAIYEHLEGWPGFNLDETRIAFKLRKDKFHYMAMADNRQRYMPLPDDRLPDR
GQPLAYPEAVQLVNPIEPEFKGEVDDKYQYSCEDKDLKVHGWICLDPSLGFWIIIPSDEF
RSGGPLKQNLTSHVGPTALSVFLSAHYAGEDLVPKFGQGEPWKKVFGPVFIYLNSVTSGE
DPLTLWEDAKKQMLMEVQSWPFSFPASEDFPSLSQRGNISGRLLVLDRYFKDDKISASGA
YVGLAPPGEAGSWQRECKDYQFWTRADEEGNYVISNIRAGDYNLYAYVPGFIGDYKYDIK
ITITSGTNFPFWQVDHYFKLFEIMSQKLTCYKSGCSIEMDDLVFEPPRNGPTLWEIGIPD
RSAREFYIPDPDPKYVNKLFINHPDRFRQYGLWERYADLYPNGDIVFTIGESDYKKEWFF
VQVTRKTDEKTYQGTTWQIKFKLDNVDQNEIYTLRLALASAAQAELQVRVNDNSSTNTPL
FSSGVIGKDNAIARHGIHGLYWLFNVNLQGTILIEGENTIYLTQANATSPFQGIMYDYIR
LEGPPSHD
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgactgctccaggagtacaactacatcttcccgatgatcaccatgtggtgatggacaat
ggcattctccaagtgactttatcagtaccagatggcattgtaactggaattacatacaat
ggcgtcgataatttgcttgaggttctaaatgatgaaacaaacagaggatattgggacgtt
gtttggagttcgacaggaactacagggactactggaacatttgaaaggctcatatgcaca
acatataaggtcatattggaaacagatgatcaaatagagttgtccttctcaaggacatgg
gatgtgtcgcttcaggacgagattattcccctgaacatagacaaaaggtttataatgctt
aaaggttcctcggggttctattcttatgcaatttatgaacatttagagggatggcctggt
ttcaaccttgatgaaactaggattgcattcaagctcagaaaagacaagtttcattacatg
gctatggcagataacaggcagagatacatgcccttacctgatgacaggttaccggataga
gggcaaccacttgcttatccagaagcagtccaacttgtcaatcccatcgagcctgagttc
aaaggcgaggttgatgacaagtatcagtactcatgtgaggacaaagatctcaaggtccat
ggatggatttgtttggatccatcactaggattctggataattattcccagtgacgaattt
cgatctggaggaccccttaaacaaaacctcacatctcatgttggtccaactgctctttct
gtgtttctcagtgctcattatgcaggagaagatttggttccaaagtttggacaaggggag
ccatggaaaaaagtctttggaccagtttttatatatctgaattctgtcacttcaggggag
gatcctcttactctctgggaggatgctaaaaaacagatgctgatggaagttcaaagctgg
cctttcagttttccagcctctgaggattttccatcattgtctcaacgcggtaatattagt
ggaagactgttagtcctagacagatacttcaaagacgataagatatctgcttctggtgca
tatgttggtttagctccaccaggagaagctggttcctggcaaagagaatgcaaggactac
caattctggacaagagcagatgaggaaggcaattacgtcataagtaatatacgagcaggc
gactataacttgtatgcatatgtccctggattcattggagactacaagtacgatatcaaa
atcacaattacctcaggtactaattttccattttggcaagtagaccattatttcaaactt
ttcgagattatgagccaaaaattaacatgttataaatcaggctgcagcattgagatggat
gatctcgtctttgaacccccaagaaatggacctacactctgggaaattggcattcctgat
cgttctgctcgcgagttttacattcctgatcctgatccaaaatatgttaacaaactcttt
attaatcatcctgataggtttagacagtatgggctatgggagagatacgccgacttgtat
ccaaatggggatatagtctttacaattggagagagtgactacaaaaaagaatggttcttt
gttcaagtcactaggaaaactgatgagaagacatatcaaggaacaacatggcaaataaag
ttcaaactcgacaatgttgatcaaaatgaaatctatacactaagactggcacttgcatca
gcagctcaagctgaactacaggttcgtgtcaatgataattcaagcacgaatactcctcta
ttttcaagtggagtgatagggaaggataatgcgatagcaagacatggaattcatggactc
tactggctgttcaatgtgaatttgcagggtactatactaattgaaggggaaaatactata
tatttgacacaagcaaatgcaactagtccttttcaagggatcatgtacgattatattcgt
ttagaaggacctccttcccatgactaa
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