Solanum stenotomum: 125854478
Help
Entry
125854478 CDS
T08385
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
125854478
Enzymes [BR:
sstn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
125854478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Y_Y_Y
Motif
Other DBs
NCBI-GeneID:
125854478
NCBI-ProteinID:
XP_049389995
LinkDB
All DBs
Position
2:6424176..6429872
Genome browser
AA seq
653 aa
AA seq
DB search
MIVPKRSQISTPVLQLLQPEDQVVIDNGIFQLRLTNPGGKIIGIQYNGIENLLELNNPIL
NGGFWDLNWSVPGTSGTRGKFDEIECNSFKVIVETEEQIELSFTRTWDPSLQGDQSPLTI
DIRYIILHDSPGFYSYAIYEHKENMPAFNLNETRIAFMLSIEKFRYMAMADDRQRLMPLP
EDRVPPRGKELAYPEAVLLVDPVEPEFKGEVDDKYQYSCENKDNKVHGFICLDPPVGFWQ
ITPSNEFRTGGPIKQDLTSHVNPTTLAMFMSTHYGGQDFVTQFGSGEQWKKVFGPVFIYL
NSVADKTDTLSLWDDAKERMHKEVDCWPYSFASSEDFPKADQRGAIRGRLLVNDRCISKE
YLSAKGAFVGLAPPGNAGSFQRECKGYQFWTNSDDEGYFSIQNVRPGDYNLYAWVPGFIG
DYKYEKSIAITAASDVDIGELMYEPPRSGPTLWEIGIPDRSAAEFYVPDPDPQYINKLYI
NQPENRFRQYGLWERYADLYPDQDLVFTVGSSDYKKDWFYAQVTRKVGDKAYKPTTWQIK
FNLESIDHNGSYTLRIALSSATSSILEVRVNEEEANPPHFSSGLIGSDNTIARHGVHGLY
WLFNVEVAAGQLFQGENIIYLKQARSVSALNGIMYDYIRLETPPLSAMYYKYF
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgattgtaccaaagcgttcacaaatatcaactccagttctgcagcttcttcagccagag
gaccaagtggtaatagataatggcatattccaactcagattgacaaatccaggaggaaaa
atcattggaattcaatataatgggattgaaaatttgttggaactcaacaacccaatcttg
aatggagggttctgggacttaaactggagtgtacctggaacttctggaacaagaggaaaa
tttgatgagattgaatgtaatagttttaaagttatagtggaaactgaagaacagatagag
ctctcctttacaaggacatgggatccttcacttcagggcgaccaatccccgttaaccata
gacataaggtacataattcttcatgattcgcctggtttttactcttatgctatttatgaa
cacaaagagaatatgccagcattcaacctcaacgaaaccaggatagctttcatgctcagc
atcgaaaagtttcggtacatggctatggcagatgataggcaaagactaatgccccttcct
gaagatcgggtacctccaagagggaaggaattggcatatccagaagcagtcctgctagtc
gatcctgtggagccagaattcaaaggagaagttgatgacaagtatcagtattcatgtgag
aacaaagataacaaagtccacggcttcatttgcttagatcctcctgtgggattctggcaa
attacgccaagcaatgagttcagaacaggtggacctatcaaacaagatcttacttctcat
gttaatccaacaactctggctatgttcatgagcactcattatggaggccaggattttgtg
actcaatttggatcaggcgaacaatggaagaaagtttttggacctgtttttatatatctc
aattctgtagcagacaagactgatacactttccctatgggatgacgcgaaagaacggatg
cacaaagaagtcgactgctggccttatagtttcgcgagttcagaagattttccaaaagct
gaccaaagaggtgccatccgtggtagattattagtcaatgacaggtgtataagcaaggag
tatttgtctgcaaagggtgcttttgtgggactagctccacctggaaatgcaggatcattt
caaagagaatgcaagggctaccaattctggacgaactcggatgatgaaggctatttctca
atccaaaatgttcgtccgggagactataacctctatgcttgggtacctggtttcattgga
gattacaaatatgaaaaatccatagcaattactgcagcttctgatgttgatatcggtgaa
cttatgtacgagcctccgaggagtggtcctacattgtgggaaatcggtatccctgatcgt
tctgctgcagaattctacgttcctgaccctgatccacagtatatcaacaaactttacata
aaccaaccagaaaacaggtttagacagtacggattatgggagagatatgcagatttatat
ccagatcaagatttggtatttacagttggaagcagtgactataaaaaagattggttctat
gctcaggtgacaagaaaagttggtgataaagcatataaacctacaacatggcaaattaaa
ttcaatttagaaagcattgatcataatggaagttacacactccgtattgcgctctcatct
gcaacttcttctatattggaggtaagggtgaatgaggaagaagcaaatccaccacatttc
tcaagtggattgattggaagtgataatacaattgccagacatggagtccatgggctgtat
tggttgtttaatgtggaggtagctgcaggacaactctttcaaggagagaatatcatatac
ctcaaacaagcacggagcgtcagtgctctcaatgggattatgtatgactatattcgtctg
gaaactcctcctctttccgccatgtattataagtacttttaa
DBGET
integrated database retrieval system
