Solanum stenotomum: 125854480
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Entry
125854480 CDS
T08385
Name
(RefSeq) rhamnogalacturonate lyase B-like isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
125854480
Enzymes [BR:
sstn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
125854480
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
DUF5443
Ig_DR_A0283-like
Endotoxin_C
GKRP_SIS_N
Motif
Other DBs
NCBI-GeneID:
125854480
NCBI-ProteinID:
XP_049389996
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Position
2:6409564..6415246
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AA seq
633 aa
AA seq
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MAQGVQLHLQDDRHVVMDNGILQVTLSVPDGIVTGIRYNGVDNFLEVLNDETDRGYWDVV
WSSTGTTGKFDSLICTTYNVILQTNDQIELSFSREWDVSLQNKLIPLNIDKRFIMLKGSS
GFYSYAIYEHLKGWPGFNLDENRIAFKLRKDKFHYMAVADNKQRYMPSPDDRLPHRGKPL
AYPEAVLLVNPIEPEFKGEVDDKYQYSCENKDNKVHGWISMNPPVGFWQITPSDEFRSGG
PVKQNLTSHVGPTTLAMFISSHYAGDDLIPKFAQGEAWKKVFGPVFIYVNSVKQGGHPIA
LWHDAKIQMQHEVQSWPYSFPASEDFSSANQRGNVSGRLLVQDKYKNQGHIPANGAYVGL
AQPGEAGSWQRECKGYQFWAKTDNNGNFSIKNICRGHYNLYAWVPGFIGDYVYKKLISVT
PGSRINVHDIVYQPPRNGPTLWEIGIPDRTAAEFFVPDPNPKFINKLFINHPDRFRQYGL
WDRCSELHPTDDLEYVIGKSDYRKDWFFVQVPRSNNDGTYQGTTWRIIFKLDSVNQSRMY
KLRIAIASASLAEVQVRVNNPSTNQPLFTTGLIGNDSSIARHGIHGLYWLHNIDIHGNLL
VTGDNTIYLGQPRRQSPFHGIMYDYIRLEAPPN
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaggagtacagcttcaccttcaggacgatcgccatgtggtgatggacaatggt
attctccaagtgacattatcagtaccagatggcattgtaaccggaatcagatacaatggc
gtcgacaattttcttgaggttcttaatgatgaaacagacagaggatactgggacgttgtc
tggagctcgacaggaactacaggaaaatttgacagcctcatatgcacaacctataatgtc
atattgcaaacaaatgatcaaatagagctgtccttctcaagggaatgggacgtgtcgctt
cagaacaaacttattcctctgaacatagacaagaggtttataatgcttaaaggttcctca
ggattctattcttatgcaatttatgaacatttaaagggatggcctggtttcaaccttgac
gagaataggattgcatttaagctcagaaaagacaagtttcattacatggccgtggcagat
aacaagcagagatatatgccttcacctgatgacaggttaccacatagaggaaaaccactt
gcttatccagaagcagtcctacttgtcaatcccatcgagcctgagttcaaaggcgaggtc
gatgataaataccagtactcgtgtgaaaataaagacaacaaggtccacggctggatatct
atgaatccacctgtgggattctggcaaattactccgagtgatgaattccgatctggtgga
cctgtcaaacagaaccttacatcccatgttggtccaactactctagctatgtttataagc
tctcattacgctggggatgatctaataccaaagtttgctcaaggcgaagcctggaagaaa
gtttttggccccgtgtttatatacgttaattctgttaagcagggaggacatcctattgct
ctatggcatgatgccaagatacagatgcaacatgaagttcaaagctggccttacagtttt
ccagcatcagaagatttttcatcagcaaatcaaagaggcaatgttagtggtagacttttg
gtacaagacaagtacaagaatcaaggtcatataccagcaaatggcgcttatgttgggctt
gctcaaccaggagaagctggttcatggcaaagagaatgcaagggctaccaattttgggct
aaaacagacaacaatggaaacttctcaataaaaaatatatgtcgcggtcactacaatctt
tatgcatgggtccctggattcattggggactatgtatataagaaactcatttctgtaact
ccaggtagtagaattaatgtgcacgatatcgtatatcagcctccaagaaatggccccaca
ttatgggaaatagggattcctgatcgtactgctgcagagttttttgttcctgaccctaac
ccgaaattcatcaacaagcttttcatcaatcatcctgacaggtttaggcaatacggattg
tgggataggtgctccgagttacatccaaccgatgaccttgagtatgtaattggaaaaagt
gactatagaaaagactggttttttgttcaggttccaaggagtaacaatgatggcacatat
caaggaacgacatggagaatcatattcaaacttgattcagtcaatcaaagcagaatgtat
aaattgcgcattgcaattgcttctgcatctttagctgaagtgcaggttcgagtgaataat
ccgagcacaaaccagcctctatttacaaccggattgattggaaatgacagctcaattgct
aggcatggaattcatggattatactggctgcacaatatagacatacatgggaatctgcta
gtgacaggggacaacaccatatacttaggccaaccaagacgccaaagtcctttccatggg
attatgtatgactatattcgtctcgaagcaccaccaaactaa
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