Solanum stenotomum: 125854486
Help
Entry
125854486 CDS
T08385
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
sstn
Solanum stenotomum
Pathway
sstn03008
Ribosome biogenesis in eukaryotes
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125854486
09123 Folding, sorting and degradation
03018 RNA degradation
125854486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125854486
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125854486
03009 Ribosome biogenesis [BR:
sstn03009
]
125854486
03016 Transfer RNA biogenesis [BR:
sstn03016
]
125854486
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125854486
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
125854486
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
RNases
125854486
Transfer RNA biogenesis [BR:
sstn03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
125854486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
125854486
NCBI-ProteinID:
XP_049390009
LinkDB
All DBs
Position
2:complement(1364121..1376400)
Genome browser
AA seq
1108 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVVEEEAVVIEDVRIPVDTSKPNPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPTTFEEVFECMFDYIDRLFSMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
SAKDAADAAAEEEKLREEFEREGRKLPPKQESQVFDSNVITPGTQFMATLSIALQYYVHL
RLNHDSGWKNVKVILSDANVPGEGEHKIMSYLRLQRNLPGYDPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAADCEGKAKRKAGEFDEKGNAEVVAKK
PYQFLNIWTLREYLEFDMRIPNPPFEIDFERIIDDFIFICFFVGNDFLPHMPTLEIREGA
INLLLAVYKKEFRSMEGYLTDGSQPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQSERIK
REKAQLKRGDDSAPRAEPESLVPVSRFSGSRLASGPSPSPYQQGGTARRPQQGGTARRPQ
LQHGTSSLSVLDFPNEYYEPVDDTRSIFRTKKAARMSSGATIGAAIVEAEDSLETEVLEN
KEELKTKLNKLIREKNDVFNSENLEEDKIKLGVPGWKERYYEEKFSAKTPEEMEEVRKDI
VLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGELNITFELGSPFKPFNQLL
GVFPAASSHALPEQYRQLMTDPNSPISDFYPSDFEVDMNGKRFSWQGIAKLPFIDEARLL
AEVAKVEHTLTEEEARRNCVMNDMLFVSLSHPLSPYIFSLDDRCKQLTDNERVEVKECLD
PKASGGMNGYISLCMGDPCPPIFRAPMDGLEDIMDNQVICAIYKLPDFHKHITRPPKGVI
FPKKMVTFSDIKPDPVLWHEDSGRKPWENGRNHHPGGNSGRHLGEAAHRLVSNSLQIRSG
RGDNLHAQPVPYPSGPFPSSQGYNGQGHVRPNFDYSARDDTAAPYQYDQSYHPAYIPTAV
DPYSRAPPLYETGGQPVPPSRDYHRHGHHAAVMQQNVGYSYSSHANRPQHVSQSPVPPID
HFHQQSRYSSYPNYHEPYEPGSYNPPYEPGSYHPPYEPGSHNPQDGGWAPQVNQNAAWGY
GNPRPSSNHFSALGRGNDRGPPSSGYRR
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcattttaccgatggttagctgagaagtatccgatggttgtggtggat
gtggtagaagaagaggccgttgttatcgaagatgtaagaattccagtcgatacgagcaaa
cctaatcccaacaacatcgagtatgataacttgtatctggatatgaatggtatcattcat
ccatgttttcatcccgaagatagaccctctcctacaacatttgaagaggtctttgagtgc
atgtttgattacatagacaggcttttctctatggtgcgtcctcgaaagctgctatatatg
gctattgatggtgttgcaccaagggcaaaaatgaatcagcagagatctagacgttttaga
tcagcaaaagatgctgcagatgcggcagctgaggaggaaaagctgcgggaggaattcgag
agagagggtaggaagctccccccaaagcaagagtcacaagtttttgattcaaatgtcatc
actcccggaactcagttcatggccacattgtcaattgctcttcagtactatgttcatctt
agactaaaccatgattcgggatggaaaaacgtcaaggttatactttctgatgcaaatgtt
cctggtgaaggggagcataaaattatgtcctatcttcgactccaaagaaatcttcctggt
tatgacccaaatacacgccattgtctctacggtttggatgcagatctaatcatgttggct
ttggctactcacgaagttcacttctccatactcagagaggttgtatttacgccaggtcag
caggataagtgtttcctttgtggtcaaatgggtcacttagctgcagattgtgaaggaaag
gcaaaacgaaaagcaggagaattcgatgagaaaggcaatgctgaggttgtggcgaaaaaa
ccttaccagttcctcaacatatggactttgcgggagtatttggaatttgatatgagaatc
ccaaatcctccttttgagattgatttcgagcggatcatcgacgacttcatatttatttgt
ttctttgttggaaatgattttctcccacatatgcctactcttgagattcgcgagggtgca
ataaacttgttactggctgtctataagaaggagtttagatccatggaaggttatttaact
gatggtagccagccaaatcttagcagagtagaacatttcattcaggccgtgggatcatat
gaagataagatatttcagaaaagagcgcggttacatcagagacaatctgagagaattaag
cgtgaaaaggcccagttaaaaagaggagatgactctgctcctcgagccgaacctgaatct
ttggttccagtttctcggttcagtggttctcggcttgcttcaggtccttctccttctccc
tatcaacaagggggaactgcaagacgtccccaacaaggaggaactgcaagacgtccccaa
cttcagcatggcacatcaagtctttccgtccttgactttccgaatgaatactatgagcct
gttgatgatacaagatctatttttcgcaccaaaaaagctgcacgtatgagttctggtgcc
acgataggagctgcaattgttgaagctgaggatagccttgaaactgaagtgttagaaaac
aaagaagaactgaaaacaaagctaaacaagttgatccgtgagaagaatgatgtttttaat
tcagagaatctcgaggaagacaagatcaaactgggagtgccaggatggaaagaaaggtat
tatgaggaaaaattttctgcaaagacacctgaggagatggaagaagtacgaaaggatatt
gtcttgaaatacacagaaggattgtgctgggttatgcactattattatgaaggtgtttgt
tcctggcagtggttttatccgtatcattatgctccttttgcttctgacctcaaggatctt
ggggagttgaatattacctttgaactaggttctccattcaaaccattcaatcagctgttg
ggagtttttcctgctgccagttcacatgctcttcctgaacagtataggcaattgatgaca
gacccaaactctcccattagcgacttctatccttctgattttgaggtggacatgaatggg
aagcgcttttcatggcagggcattgccaaactacctttcattgatgaagcccggctcctt
gcagaggttgcaaaagttgaacataccttgacggaggaagaagcacgaagaaattgtgtg
atgaatgatatgctttttgtgtcattatctcaccctttgtctccatacattttttctctt
gatgatcgctgtaagcagcttacagacaacgaacgtgttgaagtgaaggagtgcttggac
ccaaaagcaagtggtggcatgaatggctacatatccctttgcatgggagatccttgtcct
ccaatttttagagctcctatggatgggttggaagatattatggacaatcaagtcatatgt
gcaatatacaaactccctgatttccataagcacatcacacggccacctaaaggggttatt
ttcccaaagaagatggtgacattcagtgatataaaacctgatccagtgttgtggcatgag
gattctgggaggaaaccttgggaaaatggaaggaaccaccaccctggcggaaactctggt
cgtcaccttggagaggcagcacacaggctggtttctaatagtttgcagattaggagtggc
cgtggggataatttacatgctcaaccagtaccatatccttctggtccttttccttcctct
caaggatacaacggtcagggacatgttcgccctaattttgattattctgctcgagacgac
acagctgcgccttatcagtatgatcagagttaccaccctgcttatatccctactgctgtt
gatccatatagtagggctcctcctctgtatgagacgggtggccaacctgtccctcctagc
agggattatcatagacatggacatcatgccgctgtgatgcagcaaaatgttggatatagt
tattcttctcatgccaatcgtccgcagcatgttagccaatcgccagtaccaccaattgat
cattttcaccagcagagtagatacagtagttaccccaattatcatgaaccttatgagcca
ggaagctataacccaccttatgagccaggaagctatcacccaccttatgagccaggaagc
cataacccacaggatggtggatgggccccgcaagtaaaccaaaatgctgcttggggttat
ggcaatccacgtccctccagcaatcacttctcggctttaggaagaggaaacgatagaggg
ccaccatcttcaggctatcgccgttag
DBGET
integrated database retrieval system
