Solanum stenotomum: 125854625
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Entry
125854625 CDS
T08385
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125854625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125854625
03041 Spliceosome [BR:
sstn03041
]
125854625
03036 Chromosome and associated proteins [BR:
sstn03036
]
125854625
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
125854625
Spliceosome [BR:
sstn03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125854625
Complex B
125854625
Complex C
U2 SnRNP specific factors
125854625
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
125854625
TFTC complex
125854625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
125854625
NCBI-ProteinID:
XP_049390166
LinkDB
All DBs
Position
2:63935848..63942355
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQQPTGVICAINGSFSGGKVQEIVVARGKVLDLLRPDDNGKLQTLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNCFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITFSICGVDCGFDNPI
FAAIELDYSEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRVDLPAERGVLIVSAAMHKQKTMFFFLLQ
TEYGDIFKVTLDHDNDRVKELKIKYFDTIPVTSSLCVLKSGFLFASSEFGNHALYQFQAI
GDDPDVEASSSTLMETEEGFQPVFFQPRKLKNLVRIDQIESLMPIMDMKIVNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLSVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMNGGQLSDARSRFLGLRAPKLFSIVVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYESLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKKKMVIMIESDQGAYTAEEREAAKKECFEAAGNGENGNAEQMENGEDEDGSDP
LSDEQYGYPKSESGRWVSCIRVLDPRTTQTTCLLELQDNEAAFSICTVNFHDKEHGALLA
VGTAKGLQFWPKKSFEAAYIHIYKFKEDGKVLELLHKTQVDGVPLALCQFQGRLLAGIGS
VLRLYDLGKKRLLRKCENKLFPNSITAIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTVAGADKFGNIYFVRLSQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKLEEIVQFHVGDVVSCLQKASLIPGGGECIIYGTVMGSVGAMLPFTSRDDVDFFSHLE
MHLRQEFPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctcactctccagcaacccaccggcgtaatctgtgctatcaacggc
agcttttccggcggaaaagtacaagaaatcgtcgttgctcgtggaaaagtccttgacctc
cttcgtcccgatgataatggtaagcttcaaactctattatctgttgaaatcttcggtgct
atacgttccttagcacaatttcggttaaccggtgctcaaaaggattacattgtagttggg
tcggattcaggtaggatagtgatattggagtataataaagagaagaactgttttgataaa
gtacatcaggagacttttggtaaatcgggttgtaggaggatagttccaggtcagtatttg
gctattgatccgaaaggtagggctgtgatgattggtgcttgtgagaagcagaagcttgtg
tatgttttgaatagggatactgctgctaggttaacgatttcgtcgcctttagaagctcat
aagagccatacgattacgttttcgatatgtggggttgactgtggatttgataacccgata
tttgctgctattgaattggattattcggaggcagatcaggatccgacaggccaagctgca
aatgaggctcaaaaacatttgacattttatgaattagatttaggacttaatcatgtttcg
aggaagtggtctgaacaagtcgataatggtgctaatttacttgttactgttcctggaggt
ggggatggtccgagtggtgtgcttgtttgtgcggagaattttgtgatatataagaatcag
ggacaccctgatgttagggctgttattcccaggagggtagatttgccagcagaacgtgga
gttttgattgtttcggctgctatgcataagcagaagacaatgtttttctttcttttgcaa
actgaatatggagatatctttaaggtgacattggaccacgacaatgacagggttaaggag
ttaaagatcaagtattttgatacaattccggtcacttcttctctgtgtgtgttgaagtca
gggttcctctttgcttcgtcagagtttgggaatcatgcgttgtatcagtttcaggctata
ggagatgatccagatgttgaagcttcatcatcgacgttaatggaaactgaagaaggcttt
caacctgtatttttccagccaagaaagctaaagaatcttgttaggattgatcagattgag
agcttgatgccaatcatggacatgaaaatcgtaaatctttttgaggaagaaactccacaa
atattttcactttgtgggaggggtcctcggtcttcgttgcgcatacttaggccaggttta
gctgttagtgaaatggctgtgtcacaacttcctggtgttccaagtgctgtctggactgtg
aaaaagaatgttaatgatgagtttgatgcctacattgttgtctcttttgcgaatgcaact
cttgtactttctattggtgagacagttgaagaagttagtgacagtgggtttcttgatact
actccatctctttctgtttcattgattggtgatgattcgttaatgcaagttcatcccagt
ggtataagacatattagagaagatggccgtattaatgaatggagaactcctggaaagaga
actattgtcaaggttggatctaatagacttcaagtggtaattgcactaagtggaggggag
cttatatattttgaagttgatatgactggccagttgatggaagttgagaagcatgagatg
tcaggtgatgtagcttgtctggacattgcccctgttcctgagggaagacaaaggtcccgt
ttccttgcagttggatcatatgataacactatccgtatcttgtcgttggaccctgatgac
tgtatgcaggttctgagcctgcaaagtgtatcttcaccgccagagtctctcctttttcta
gaagttcaggcctctgttggtggagaggatggtgcagatcaccctgccagcctttttctt
aatgctggtttacaaaatggagttttattcaggactgtggtggatatgaatggtgggcag
ctttcagatgcacgttcacgtttcttggggcttagagcccctaagctcttctccattgtt
gtgagaggacggcgtgctatgctctgcctatcaagtagaccatggctaggttacatacac
caagggcattttcttttgacacctttatcatatgagagtcttgaatttgcagcctcgttt
tcatccgatcaatgtgcagaaggtgttgtagcggttgcaggggatgcgttgagggtcttc
acaatagagagattgggcgagactttcaatgaaacagctatacccttaaggtatacacca
agaaggtttgttcttcaacccaaaaagaagatggtgataatgattgagagtgaccaggga
gcatatactgcagaagagcgtgaagctgccaaaaaagagtgctttgaggcagctgggaat
ggtgaaaatggaaatgcagaacaaatggagaatggtgaagatgaggatggtagtgatcca
ctatctgatgaacaatatggttatcctaagtcggagtcaggaagatgggtttcctgcatc
agagtccttgatccaaggacaacacagaccacttgtctgctagagcttcaggataatgag
gctgcatttagcatatgcactgttaatttccatgacaaggagcatggagctctgttggct
gttggtactgccaagggcctccagttttggcccaaaaaatcgtttgaagcagcatacatt
catatatacaaatttaaagaggatgggaaggtcctagagcttctgcataagacacaggta
gatggtgtgcctcttgcactatgtcagttccaaggtagactgctggctggtattgggtct
gtccttaggttgtatgatttggggaagaaacggctgctccgaaaatgtgagaacaagcta
ttccccaactcgatcacagctatccacacctatcgtgatcggatttatgttggtgacatg
caagagtcattccactactgtaagtataggcgtgatgaaaatcaactgtacatatttgct
gatgacacggtcccaagatggctaactgcagcacagcatgtagattttgacactgtggca
ggagctgataagtttgggaatatctactttgtgcgattatctcaggacgtttcagatgag
attgaagaagatcctactggtggaaaaataaaatgggagcaggggaagctgaatggagcc
ccaaataagcttgaggaaatagtacaatttcatgttggtgatgtggtctcttgcttgcaa
aaggcatcacttattccaggagggggcgaatgtataatctacgggactgtgatggggagt
gttggggcaatgcttccatttacatcgagggatgatgttgacttcttctctcatttggag
atgcatttgaggcaggagttcccaccgttgtgtggcagggatcacatggcctacagatct
gcctacttccctgttaaggatgtaatagatggagacttgtgtgaacaattcccaaccttg
cccatggatatgcagcgcaaaattgcagatgagttggataggacaccaggcgaaattctg
aaaaagcttgaagaaataagaaacaaaattatttga
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