Solanum stenotomum: 125854756
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Entry
125854756 CDS
T08385
Name
(RefSeq) nuclear pore complex protein NUP93A-like
KO
K14309
nuclear pore complex protein Nup93
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125854756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125854756
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125854756
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
Motif
Other DBs
NCBI-GeneID:
125854756
NCBI-ProteinID:
XP_049390288
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All DBs
Position
2:57229622..57239768
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AA seq
862 aa
AA seq
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MANDVDMSGWSELLHSSSKLLEQAAPSAQFPPLQRNLDQLEALTKKLKAKTLRTEAPTQS
IAATRLLAREGINAEQLARDLKSFELKTTFEDVFPAEATTVEEYLQQIHEMAMVSAVQEA
QKDNLKNFNDYMMKVLENDWKKEKRDFLQSLSRISTLPRTNISDSSPLRGRQGQIASLTY
NPQISSGPSSVEPLALANRPIVEKKAAAYGEVVKNLTSARERGLPFKPATAFKCALESLG
LNASGGKSVGIQKIWHLLSSLMGEDSAVQYNVSKKMSLVIGARRHLEWGHEKYIMETIQA
HPAQAALGGAVGNLQRIRAFLRIRLRDYGVLDFDAVDARRQPPIDTTWQQIYFCMRTGYY
NEAREISQQSRMSHQFAPLLTEWISTGGMVSAEMAAVASEECEKMFRLGDRGGRPTYDKK
KLLLYTIISGSRRQIDRFLREFPTLFSTIEDFLWFQLSAVRESPDRSSVVLSEGLAPYTL
DDLQAYLNKFESSHYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKDMGDEGYNVDAVHMAI
VLADYGVLSEGTWVGQKFGVMDAFAEASSIIRQYGSFYLRHGDLLMSLEYYVQAAAAVGG
GQLSWSGRGNIDQQRQRSSMLKQLLTELLSRDGGIDILLGPRGTGEEGQLGRFLTDEKTR
QQFLLEAARQYQDAGLYDKSIEIQKRVGAFSDALDTINKCLSDAICALARGRLDGESQTS
GRILSGNEILEMFKYYPEISPQERENVLAQQIVLRQLEAVLSIHKLARLGNHLDAIKEVA
KLPFLPLDPRTPDFAMDIFQNLSHHVQACVPDLLKVALHCLDNVKDTDGSLRALRAKIAN
FLASNLNQNWPRDLYDKVARSL
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgacgtagacatgagtggatggagtgagcttctccattcttcttcgaagctt
ctagaacaagctgctccttcagctcagtttcctccgcttcagaggaatttggatcaattg
gaagcattaacgaagaaattgaaggcaaaaactttaagaactgaagctccgactcaatct
attgcagcaaccaggctactagctcgtgagggcatcaacgcggaacagcttgctcgtgat
ctcaagtcttttgagttaaagacgacatttgaagacgtttttcctgcggaggcaacaact
gttgaagagtatttgcagcagatccatgaaatggcaatggtctctgcagttcaagaagct
cagaaggataacctaaaaaatttcaatgattacatgatgaaagttttggagaacgactgg
aagaaagagaaaagagacttcctccagagcctaagccgaatttcaaccttacctaggaca
aatatcagcgattcaagccctttacgtggtcgtcagggacaaatagcatctttgacatat
aaccctcagatttcatctggtccttctagcgtggagcctttagcattagctaataggccc
atcgttgagaaaaaagctgctgcatatggagaagttgtcaagaatctcactagtgcaaga
gagcgtggtttaccctttaaacctgctacagcttttaagtgtgctcttgagagtttgggt
cttaatgcatctggtgggaagtcagttggcattcagaagatctggcatctattgtcgtct
ctgatgggtgaagattcagctgtccaatataatgtttcaaagaaaatgtctttagtaatt
ggagctagacgtcacctagaatggggtcatgagaagtacatcatggagacaattcaagcc
catcctgctcaggctgcacttggtggcgctgttggtaatttgcagagaatccgcgccttt
ctcaggatccgtctaagggactacggggttcttgattttgatgcagttgatgcccgtaga
cagcctcccattgataccacctggcagcagatatacttttgcatgagaactggctactac
aatgaagcaagagagatttcccaacaatctcgcatgtcccaccagtttgcacctctgctt
acagagtggatttccactggaggcatggtatcagcagagatggcagctgttgcttcagaa
gaatgtgagaagatgtttaggttgggtgatcgaggaggtcgacccacgtatgataagaaa
aagttgctactctacaccataatttctggttctcgcaggcaaattgacagatttcttcga
gaattccctacacttttctctactatagaggatttcttgtggttccaattatctgctgta
cgtgagtctcctgacaggtcttctgttgtcctaagtgaggggttggcaccctacactttg
gatgatttgcaagcttacctaaacaagtttgagtcatcacactatactaagaatggaaag
gatccgttggtttatccatatgttttacttttaagcattcaacttcttccagccgtccta
tatttgtccaaggacatgggagacgaggggtataatgtagatgctgttcatatggctatt
gtcttagcggactatggggtcctctctgaaggtacatgggtaggtcaaaaatttggggtc
atggatgcttttgctgaagcctctagcataattaggcagtatggatcattttacctgcgt
catggtgatctgttaatgtcattggagtactatgtgcaagctgcagcagcagtgggtggt
gggcagttgtcgtggagtggacgtggtaatattgatcagcaaaggcaaaggagctcaatg
ttgaagcaacttcttacagagctattgtcgcgggatggtggtattgatattttacttggt
cccaggggtactggagaagaaggtcaacttggaaggtttttgactgatgaaaagacaaga
caacaatttctgcttgaagctgctcggcagtatcaggatgcggggctctatgacaagtcc
atcgagattcagaagagagtgggggcattttcagatgcattggatacaataaacaagtgc
ctttctgatgcaatatgtgccttggcacgtggaaggttggacggggaaagccagacttct
gggcgtattctttcaggaaatgagatcctggagatgttcaaatattaccctgagatcagt
ccccaagagagagaaaatgtgttggcacagcaaattgttctaagacagctggaggctgtg
ctatccattcataagcttgcaagacttggaaatcacttggatgctataaaggaagtggcg
aagctcccattccttcctttggacccaaggacgccggatttcgccatggatatctttcaa
aatttgtctcatcatgtccaagcttgtgtacctgacctcctaaaagttgcgcttcattgt
ctggacaatgttaaagatactgatgggtcacttcgtgctttaagggccaagattgcaaac
ttccttgcaagcaatttgaatcagaattggcctcgcgatctgtatgacaaggttgctcgc
agtttatga
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