Solanum stenotomum: 125855035
Help
Entry
125855035 CDS
T08385
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sstn04131
]
125855035
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sstn04147
]
125855035
Membrane trafficking [BR:
sstn04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
125855035
Exosome [BR:
sstn04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125855035
Exosomal proteins of bladder cancer cells
125855035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_WDR41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_At4g14310
Motif
Other DBs
NCBI-GeneID:
125855035
NCBI-ProteinID:
XP_049390634
LinkDB
All DBs
Position
2:1667624..1673131
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHSRQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDSLFYVKDRFLRVYEYSTQKENQLIPIRRPG
SNSLNQGPRTLSYSPTENAILICSDVDGGSYELYIIPKDTYGKGDTVQDAKRGTGGSAVF
VARNRFAVLEKSTNQVLVKNLKNEIVKKSPLPTATDAIFYAGTGNLLCRAEDRVVIFDLQ
QRIVLGELQTPFIRYVVWSSDMESVALLSKHSIVIADKKLVHRCTLHETIRVKSGAWDDN
GVFIYTTLTHIKYCLPNGDSGIIKTLDVPVYISKIYGNTIFCLDRDGKNRPIIIDSTEYI
FKLALLRKRYDQVMSMIRNSELCGQAMIAYLQQKGFPEVALHFVKDELTRFNLALESGNI
EIALESAKKLDEKDHWYRLGVEALRQGNAGIVEYAYQKTKNFERLSFLYLITGNLDKLSK
MMKIAEVKNEVMGQFHDALYLGDVRERVKILEDAGHLPLAYITANVHGLKDTAERLAEKL
GDNVPSLPKEKKASLLKPPTPILGGGDWPLLMVTKGIFEGGLDATVRGGHEEYEEAADAD
WGESLDIGEVENLQNGDISMVLEDEEGKEENDEEGGWDLEDLDLPPDTDTPKTASNARSS
VFVTPNPGMPVSQIWVQKSSLAAEHAAAGNFDTAMRLLSRQLGIKNFSPLKQLFADLHMG
SHTYLRAFSSAPVISLAIERGWSESASPNVRGPPALIFNFSQLEEKLKTAYRATTSGKFS
DALRLFLSILHTIPLIVVESRREVDEVKELIVIVKEYVLGLQMEVKRKESKDNPVRQQEL
AAYFTHCNLQLPHLRLALQNAMSICYKASNLSSAANFARRLLETNPTNESQAKTARQVLQ
AAEKNMRDATELNYDFRNPFVVCGATYVPIYRGQKDVTCPYCTTHFVPSQQGQLCTVCDL
AVVGADASGLLCSPSQVR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaagtttgaaacgaagagtaatcgagtgaaagggctcagttttcatagcaaa
aggccatggatcttagctagtcttcatagcggtgtgatccagctttgggattaccgtatg
ggaactctcattgatcgatttgatgaacatgatggccctgttcgtggcgttcattttcac
aagtctcagcctctttttgtatcaggaggagatgactataagataaaggtctggaattat
aagctgcatcggtgcttatttacgctgcttggacatcttgattatattcgcactgtccaa
tttcatcatgaatatccctggattgtcagtgcaagtgatgatcagacaatcaggatatgg
aactggcagtctcgcacttgtatttctgtcttgactgggcacaaccattacgtgatgtgt
gccctgtttcatcccaaagaggacttggttgtctctgcatctttggatcagactgttcgg
gtctgggatattggtgctctaaggaagaaaactgtttctcctgctgatgacatcttgcgc
ttgagtcagatgaatacagacttctttggtggagtagatgctgttgtgaagtatgtcttg
gagggtcatgatcgaggggttaactgggcttcatttcaccctacactgcccctaattgtg
tctggcgcggatgatcgccaggtgaaaatctggcggatgaatgatacaaaggcctgggag
gtggacacattgagaggccatatgaacaatgtatcttgtgttttgttccattcaaggcaa
gatattattgtttccaattcagaggataagagcattcgagtgtgggatgctacaaaaagg
actggtctccagactttccgcagggagcatgacagattttggatccttgcagctcatcct
gagatgaatcttctagcagctggtcatgacagtgggatgatagtgttcaagttggagaga
gaacgccctgctttttctgtgagcggtgattctttgttttatgtgaaggatcgatttctc
cgtgtgtacgagtattcaactcagaaggagaatcagttgataccaattagaaggcctggt
tcaaacagtctgaaccaaggtcctcgaacgctttcttacagtcctactgagaatgctatt
ttgatctgttcggacgttgatgggggctcctatgaactatacattatacctaaagacact
tatggtaagggtgatactgttcaagatgcaaaaaggggaactggaggatcagcagttttt
gttgcgcggaacaggtttgcagtgcttgagaaaagcaccaatcaagtcctggtcaaaaat
ctgaagaatgaaattgttaagaaaagccctctgcctactgctactgatgcaatattttat
gctggcacaggaaacttactgtgcagggcagaggacagagttgttatctttgatctgcag
cagagaattgttcttggagagctgcagactcctttcatcaggtatgtcgtttggtcgtct
gacatggaaagtgttgctttacttagcaagcattccatagtaatagctgataagaagctt
gtgcaccgttgcactcttcacgagacaattcgtgtcaagagtggtgcctgggatgacaac
ggggtcttcatttataccacacttacccacatcaagtactgccttcccaatggcgatagt
ggaatcattaaaaccttagatgtcccagtctacatctctaagatatatgggaacactatt
ttttgcttggatcgagatgggaagaaccgtcctattattattgattcaactgaatatatt
ttcaagctggccctgcttagaaagagatatgaccaggttatgagtatgataagaaactcc
gagctttgtggtcaagccatgattgcttatttgcagcagaagggttttcctgaggttgct
cttcattttgtcaaggatgagcttactcgtttcaacttagcacttgaaagtgggaacatt
gagatagctcttgaatctgctaagaagcttgatgagaaggatcattggtataggcttggg
gtggaggcccttcgacagggaaatgcaggtattgttgaatatgcctaccagaagacgaag
aactttgagaggctctctttcctttatctgataacaggaaacctggataagttgtcaaaa
atgatgaaaattgctgaggtaaaaaatgaagttatgggtcaattccacgatgccttgtac
cttggtgatgttcgtgagcgtgtcaagattttggaggatgctggtcatcttccccttgca
tacatcacagctaatgttcacgggctgaaggatactgctgagcgtcttgctgaaaaactg
ggtgataatgttccatcattgccaaaggagaagaaagcatctctcttgaagcccccaact
cccattttgggtgggggagactggcctctactgatggtcacaaaaggtatatttgaaggt
ggtttggatgctacagtcaggggtggacatgaggagtacgaagaggctgcagatgctgat
tggggtgagtcactggatattggtgaggtggaaaatctgcagaatggggatatcagtatg
gtgctggaggatgaagaaggaaaagaagaaaatgacgaggaaggaggatgggatcttgag
gatttggatctgccacctgatactgacacaccaaagactgcttccaatgcccgctcatct
gtttttgttaccccaaaccctggcatgcctgtcagccagatttgggtccaaaaatcatct
cttgctgcagaacatgcagctgctggcaatttcgatactgctatgcgtttgctgagccga
caactagggattaagaacttctctccattaaagcaattgtttgctgatcttcatatggga
agccatacatatctccgtgccttctcctcggcaccagttatctctctggcaatcgaaaga
ggttggagtgagtcagctagtcccaatgtgcggggtccacctgccctcatcttcaatttc
agtcagctggaagaaaaacttaaaactgcctatagagccactacttctgggaaattctct
gatgctcttagattattcctgagcattcttcacaccattcctttaattgtggttgagtca
agacgagaggtggatgaggtcaaggaattgattgtcatagtgaaggagtacgttttaggt
ttgcagatggaggttaagaggaaggaatcaaaagataaccccgttcgtcagcaggagttg
gctgcctacttcacacactgtaatctgcagcttccacacttgagactcgcattacagaat
gctatgtctatctgctataaggcaagcaatctcagctcagcagccaactttgctaggaga
ctgttggagacaaatccaaccaatgaaagccaagcaaaaacagcccgccaggttcttcaa
gcagctgagaaaaatatgagagatgctacagagttgaattatgacttcagaaatccgttt
gtggtctgtggcgctacatatgtccccatatacagaggccagaaggatgtcacttgccct
tattgtactactcattttgttccatcccagcaaggacagctttgtactgtttgtgatctt
gcagttgtaggagcagatgcctctggcttgctttgctcaccttcacaggtcagataa
DBGET
integrated database retrieval system
