Solanum stenotomum: 125855202
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Entry
125855202 CDS
T08385
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
sstn
Solanum stenotomum
Pathway
sstn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125855202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125855202
03036 Chromosome and associated proteins [BR:
sstn03036
]
125855202
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125855202
Coactivators
SAGA/TFTC/STAGA complex
125855202
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
125855202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
125855202
NCBI-ProteinID:
XP_049390849
LinkDB
All DBs
Position
2:complement(4658153..4669763)
Genome browser
AA seq
934 aa
AA seq
DB search
MDPSIMKLLEEDEDETMHSGADVEAFTAALNRDIGGDNSQSQPSDSDSVPLSQGSSYTSN
QFAPWQTANHDENASCCSLQDSETMQPKEENLSDMQLKRLDTDSQNQQQKNDSSQEINSL
PLQHISQDSYHTTEVEQDTLHSSRAVSMQNPEKNTQNPESPHLNLQGANNLQSMQSLTTG
TSGLPRVATVASNQSESATGSSSQAAMNIAKQGKQVPFAMLFPHIQPQLDKDRAAQLQTL
YVKLKKNEISKESFVRNMRSIIGDQMLKMAVYKFQSQASKNSQSVPGQFPQSQASQQQHS
LMPADDSSNMAIESKAQKLHEMENQADLRGAQGSQMPSSGLTAVKQERDHTPFPIQGLNR
QQQQHLHFSQASFPTFANAGNNYSAYSASNVNSSTTQPLKQQSDDAQMRQISVQQNRNAT
QFGVPTQAMGIMSAPKFEKQNTFGEAKRLPGGGLNISSTSRIQQTSVQWQPSANKEQKSI
LSSPMTNPKPEPIDHFHDQLHRSQLSPFSSVQVDQGNSTSESSRDESIEQTSRIGLSSTT
SMKPSNSASSSMSSHMDTSTLLTSRTLSVTSPLGLGNNGKTPVKKPSIGQKKPLDALGSS
PPPSGKKQKVSGGFLDQSIEQLNDVTAVSGVNLREEEEQLFSGPKEDSRVSEASRRVVQE
EEERLILQKIPLQKKLAEIMAKCGLKNMSNDVERCLSLCVEERMRGLISSLIRLSKQRVD
IEKSRHRTIVTSDVREEIMSINRKAREEWEKKQADVEKLQKANEPEGSIGVDGDKEKDEG
RGKSIKVNKEEDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREGGGDVASGSQP
GKDVTRKNLSAPTRSSKDPQEAEKRIQSSAIATPGAVRRAGRTRGIITQTRIARSITVKD
VIAVLEREPQMSKSTLIYRLYEKARSNASSAESS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggatccgtctatcatgaagctccttgaagaagacgaggatgaaacaatgcattcgggg
gcggatgtggaggcattcactgctgccctaaacagggatatcggtggagataattcacaa
tctcagccttcggattccgacagcgtaccattgtctcaaggaagcagttatacctcaaat
cagtttgccccatggcaaactgctaaccatgacgaaaatgccagttgttgtagccttcaa
gattcagagaccatgcagccaaaggaggaaaatttgtctgatatgcagttgaagagactt
gatacagattctcagaatcagcagcaaaaaaatgattcatcacaggagatcaattccctt
cctttgcagcatatatcccaggacagttatcacaccacagaggttgaacaggacacactt
cattcttctagagcagtgagtatgcagaatcctgaaaagaatacgcaaaatccagaatct
ccacatctgaatttacagggggcaaataatctacaatccatgcagtctttgacaacagga
actagtggtctgccacgtgtggcaacagtggcaagtaatcagtcagaatctgcaactggg
tcgagcagccaagcagcaatgaatatagctaaacagggaaaacaagttccttttgccatg
cttttccctcacatacaaccccaacttgataaggacagggcagcgcaactccagacactt
tacgttaaactcaaaaaaaatgaaatttccaaggaaagttttgtaaggaacatgagaagt
ataattggtgaccagatgctcaaaatggctgtatataaatttcaatctcaggcatcgaaa
aactcacagtctgttcccggtcaatttcctcagtctcaggcttcgcagcagcaacattcg
ctcatgccagctgatgattctagcaatatggcaattgagagtaaagctcaaaagttgcat
gagatggaaaaccaagccgatctgcgtggagcccaaggaagccagatgccttcttctggt
ttgactgctgtaaaacaagaaagggatcacacaccatttccaattcagggacttaacaga
caacagcaacaacatttacacttctcgcaggcatcttttcccacatttgcaaatgcaggg
aacaattacagcgcatattctgcatctaatgtcaactcttcaacaacacaacctcttaaa
cagcaatctgatgatgcacaaatgagacaaatttcagttcaacagaacagaaatgcaact
cagtttggagtgccaacacaggccatgggaataatgagtgcccctaagtttgaaaagcaa
aacacttttggcgaagccaaaagattacctggtgggggtcttaatatttcaagtacttca
agaatccagcagacctcagttcagtggcaaccctctgccaataaagagcagaaaagtatt
ctttcatcaccaatgaccaatccaaagcctgaaccaattgatcatttccatgaccagcta
catagatcccagttatcgcccttctcctctgttcaagtggatcaaggaaattccacttcg
gaaagttcaagggatgaatctattgaacagacctccagaattggtttatcatcaacgact
agcatgaaaccttcaaattcagcctcgtcttccatgtcatctcatatggacactagcacg
ttgttaacttctcggacactttctgtgacatctccgcttgggctaggaaacaatggaaag
actcctgtgaaaaagccttccattggacagaagaagccccttgatgcactaggttcctca
cctccaccttcgggaaagaagcaaaaggtgtcgggaggttttctagatcagagcattgaa
caacttaatgatgttactgctgttagtggagttaatctaagggaagaggaagagcaacta
ttttctgggcccaaggaggacagccgagtttctgaagcatctcgtcgagttgtgcaagaa
gaagaggaaaggctgattttgcagaaaattccacttcagaagaagttggcagaaatcatg
gcaaaatgtggtttaaagaatatgagcaatgatgtggaacgatgcttgtcgttgtgtgtg
gaggaaagaatgcgtggactcataagtagtctcatcagactgtcaaaacagagagttgac
attgagaagtcaagacacagaacaattgtcacctcagatgttcgtgaagaaatcatgtca
atcaatcgaaaagcccgggaagaatgggaaaagaaacaggctgatgtggaaaaactccaa
aaggcaaatgaacctgaaggtagtattggagttgacggggataaggagaaggatgagggt
cgcgggaaatcaataaaggtaaacaaggaagaagatgataagatgcgaactacagctgct
aatgttgctgctcgagctgctgttggaggggatgacatgttgtcaaagtggcaattaatg
gctgagcaggcaagacaaaagcgtgaagggggaggtgatgtggcttctggttcacagcct
ggtaaagatgtgactaggaagaatttatcagctcccacaaggagctcaaaggacccccaa
gaagctgagaaacggatccagtcatctgcaatagccacacctggtgctgtgagaagagcc
gggagaactcgagggataataacacaaactaggattgctcgcagtattactgtaaaagat
gtgatcgccgtcctagaaagagaacctcaaatgtctaagtctacactgatataccgcttg
tatgagaaagctcggtccaatgcttcatcagctgaatcatcctga
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