Solanum stenotomum: 125855212
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Entry
125855212 CDS
T08385
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sstn
Solanum stenotomum
Pathway
sstn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125855212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125855212
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
125855212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_11
Motif
Other DBs
NCBI-GeneID:
125855212
NCBI-ProteinID:
XP_049390862
LinkDB
All DBs
Position
2:18151322..18155724
Genome browser
AA seq
1038 aa
AA seq
DB search
MDSGDGSVSKRRTRQQSFKKRAKLNKKRNRLSQSGNRTTCSMNVNSGEDVSRGRKRKMAE
CSRDDKRKSKNARVVRNVGNNGRRKFSPGTCESITKRPFIEEMSDDDSKEESDPDFVIVE
EEEEEEAVNTSGSSSNVGLRSPMLNAAEEVVSSTSSMCSTTDESEELTDITSSSQSEFES
SSDDIDSDDPNDKNNRVVESSSSDDISSDFDDEESEHDDLSYPKKNGGKKKSDRGLVPQL
VEDGEKHKKGRPYILRPRSISKSKKKKLNHGNCSSRPILLSDDEESKSLSEEDCEVDESA
KNIVQKDVIKKTRKNTLEDSEFLKFVVDSIINVDDHDKLTPPEEKEQVPVKETLPLVFRF
EDEEPFPPEKEEWEKEIENLFVEMDTCILESHIGFTNPSVSLMQNGDISGCEMGNHHLVL
DEQIGLICKVCSHVHLEIKYIFPPFAERTRGRNGRKYCRESPSLLDVDGFRFSDSSTVQD
SPVYEEGTVWDLVPSNAKATMFPHQRGGFEFMWKNIAGDIILERLREPLSDSKGGCIISH
PPGTGKTRLTIVFLQSFLKMFPKCRPVIIAPSNLLLNWEAEFHKWEVNIPFHNLNNKDFS
FQEDEATASVFHCLSHAGRKNPQLIRMVKLRSWAKSKSVLGISYDLFRILTGGDGDGYAK
EIREILLKLPGLLILEEGHTARNEQSLVWKALKKVETEKRILLSGTPFQNNIKELYNTLY
VVSPKFASDLEQKWASLSSSIDKNARALEELRDIISPFVHRCSENVKKVSLPGIRDTVIH
LKPTDLQKELLKRIPENPGSFYEQNLVSLISVHPSLVAKRKEFSESVSHLKEQRCRLDPD
IGVKMKFVVELIKLCGGPKERVIIFSQLLDPLNLIKEQLNSLFGWTLGREILYMDGKLDV
KQRQISINSLNDPNSDVKVLLASIKACSEGISLIGASRVVLLDVLWNPSVQQQAISRAYR
NGQTKVVHVYNPVISKWEVDKIEQQTRKKYHSDVLLSRNEVKMDPSRSVSEDNILESMVK
HEGLRHIFEKLSHAPCTT
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggatggctctgtttcaaagaggaggactagacaacaatcttttaaaaaa
agggccaagttaaataagaagaggaacagattgagtcaaagtggtaatcgtacgacttgt
tctatgaatgtgaatagtggagaggatgttagtcgtgggaggaaaagaaaaatggcggag
tgttcgagagatgacaagagaaaatcaaaaaatgcaagggtggtaagaaatgtgggaaac
aatgggaggaggaagtttagtccaggaacttgtgagtccatcacgaaacggcctttcatc
gaggaaatgtctgatgatgattctaaggaggagagtgatcctgattttgttatcgttgag
gaggaggaggaggaggaggctgtaaatacgtcaggatcttcgtccaatgttgggttaagg
agtcctatgttgaatgcagcagaggaggttgtttcatctacctcaagcatgtgtagcaca
actgatgaatccgaagagttaactgatataacctcatcttctcagtcggaatttgaatct
tcaagtgatgatattgatagtgatgaccccaatgacaagaataaccgggtggttgaatca
tcgagttcggatgatataagcagtgattttgatgatgaggaatcagaacatgatgatctg
agctatcctaaaaaaaatggaggaaaaaagaagtcagatcggggactagtacctcagctt
gttgaagacggtgaaaagcacaagaaaggccgaccatatattcttcggccacgctcaatt
tctaagtccaaaaagaagaaattaaaccatggaaattgtagtagtagaccgattcttctt
agtgatgacgaggagtctaaatccttgtctgaagaggactgtgaggttgatgagtctgca
aaaaatattgttcaaaaggatgttattaaaaagactcggaagaacactcttgaagattct
gaatttctgaagtttgtcgttgattctataataaatgttgatgatcatgataaactcact
cctcctgaagagaaggaacaggttcctgtcaaagaaacacttcctttagtattccggttt
gaagacgaggaacctttccccccggagaaagaagaatgggaaaaggaaattgaaaatctt
tttgttgaaatggacacgtgtatcttagaatcacatattggctttacaaatccatctgtt
tcgctgatgcagaatggagacataagtggctgtgagatgggaaaccaccatcttgtgcta
gatgaacaaattggactcatctgtaaagtttgttcacacgtgcatttggagatcaagtac
atcttccctccttttgctgagagaactcgagggaggaatggaagaaaatattgtagagag
tcgccatcactcttggatgttgacggcttcagattttctgattcttccacagtccaggat
tctcctgtttatgaagaaggaaccgtgtgggatttagttccgtcaaatgccaaagcaaca
atgtttcctcatcaacgcggaggatttgagttcatgtggaaaaacattgctggagatata
attcttgagagactgagagagcccctatctgatagtaaaggaggatgcataatctcacat
ccacctggcactggaaaaacccgactcaccatagtatttcttcagtcatttctgaaaatg
tttccaaagtgtcggcctgtaatcatagctccttccaatttgcttcttaactgggaagcc
gagttccataaatgggaggtgaacattcccttccacaacttgaacaacaaggatttctct
ttccaggaagatgaagctactgctagtgtcttccactgtttatcccatgccggaagaaaa
aatccacagcttatacgtatggtgaagctgagatcctgggctaaaagtaagagtgttttg
ggaatcagctatgacttgttcaggattctcacgggaggtgatggagacggttatgccaaa
gagattagagaaatccttctaaaattacccggtcttctgatccttgaagaagggcacact
gctcggaatgagcaaagccttgtgtggaaagcattgaaaaaggttgaaacagagaagcgc
atacttttgtctggaactccgttccagaataacatcaaagagttgtacaacactctctat
gtagttagtccgaagttcgcttcagatttggagcagaaatgggcttctcttagcagttcc
attgacaaaaatgcccgagcattggaagagcttagggatattatttcaccatttgttcat
agatgtagtgaaaatgtaaagaaggtaagtcttccgggtataagggatacagtgatacac
ttgaagccgacagatttgcagaaagagttgcttaaaagaattccagagaatccaggctcg
ttttacgaacaaaatctagtgtctctgatctctgttcatccttcattagtggcaaagagg
aaggagttttctgagtcagtaagtcatctaaaagaacaaagatgtcggttggatccagac
attggagtaaaaatgaaatttgttgttgaactaatcaaactctgtggtggcccgaaggag
agggttataatatttagccagttacttgatcctctaaacctgatcaaggagcaactcaat
tctctcttcggctggactttaggccgtgagattctctatatggatgggaaacttgatgta
aagcagcgacagatatcaataaattctcttaatgaccctaacagtgatgtaaaagtgctt
cttgcttcgataaaagcctgttcagaaggaataagtcttataggggcctcaagagtggtt
ttgcttgacgttctctggaatccctcagtacaacaacaagctatcagtcgagcctacagg
aatggtcagactaaagttgtgcatgtttacaatccagtgatatcaaaatgggaggttgac
aagatagaacagcagacgagaaaaaagtatcattcagatgtacttttgtctagaaatgaa
gtcaagatggatccttcacgttccgtgtcagaggataacatactagaatccatggttaag
catgagggcctccgtcatatttttgaaaaactatctcatgcaccatgtactacatga
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