Solanum stenotomum: 125855451
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Entry
125855451 CDS
T08385
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125855451
09123 Folding, sorting and degradation
03018 RNA degradation
125855451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125855451
03041 Spliceosome [BR:
sstn03041
]
125855451
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125855451
mRNA cycle factors
Stress granule specific factors
125855451
Spliceosome [BR:
sstn03041
]
Complex C
Other components
Complex C specific factors
125855451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_RdRP1_2
RRM_occluded
RRM_5
RRM_7
RRM_3
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
125855451
NCBI-ProteinID:
XP_049391128
LinkDB
All DBs
Position
2:complement(10109858..10113412)
Genome browser
AA seq
641 aa
AA seq
DB search
MAAVPQLPATVQIQAAVGVTPPPSPHVVGGMGGVGVGQYSLYVGDLDTTVDEGQLYEVFN
QVAPVLSVRVCRDQRRASLGYAYVNFTSTQDATTARELLNFTQVNGKPMRIMFSHRDPSL
RKSGYANVFIKNLDSSIDNKALQDTFGAFGTVLSCKVAVDSSGQSKGYGFVQFDQDEAAQ
KAINRLNGMLINDKQVYVGYFIRGQERRGNVCDKFTNVYVKNLPESTSDEDLKKLFEKYG
TITSALVMTDSSGKSRGFGFVNFETWNAAASAVEELNGHSLNDKVLYVGKAQKKSEREAD
LRAKFEQERASRFEKLKGANLYLKNLDDSVNDENLKELFVEYGTITSCKVMRDAKGSSKG
SGFVAFSTPEEATRALNEMNGKLIGRKPLFVAVAQRKDERRVWLQQTHFARMRPTGLMTP
PPGGMPGYHTGAPRLAPPQVYFSQGVATQAAGFGFQQQFMPGLRPGVGPNFFLPYQFQHH
QGQHGRIGGRRGGYPQQQHQWNSGRFNPNGRNGMHPSIPQGMMGSIMRAPFDASSAMTTP
PLDIQRSNPVPPSTLASSLAFASPEDQHAMLGEQLFPLVEHIERDHAGKVTGMLLEMDQT
EVLHLIESPDALKEKVSEAMDVLCVEPASVGDKFGSLILNE
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggttcctcaattaccggctacagtacaaattcaggcggctgttggagtaacg
ccaccgccgtctccgcatgtagtgggaggaatgggtggtgttggtgttggtcaatattcg
ctgtacgtcggggatctggatacgacggtagatgaaggacaattgtatgaagtttttaat
caggttgcaccagtgttgtctgttagggtttgcagagatcaacggcgagcgtcccttggt
tacgcttacgtgaacttcacttctacccaagatgctactactgcaagggagttgttgaat
tttactcaagtgaatggaaaacctatgaggataatgttttctcatagagatcctagtttg
aggaagagtgggtatgctaacgtgttcattaagaacctggactcgtcgatagataacaag
gctttgcaggacacttttggtgcctttggaacagttctttcctgcaaggtagctgttgat
agtagtggtcaatcaaaaggctatggttttgtacagtttgatcaggatgaagctgcacag
aaagcaatcaatcgactaaatggtatgttaataaatgataagcaagtgtatgttggctac
ttcattcgtggtcaagaaaggagaggaaatgtttgtgataaattcacaaatgtttatgtg
aaaaacttaccagaatccactagtgatgaagatctgaagaaactttttgagaagtacggc
acaatcaccagtgctctagttatgacagactctagtgggaaatccaggggttttgggttc
gtgaattttgagacatggaatgctgcagcctctgcagttgaagaactgaatggtcattct
ttgaatgacaaggttctgtatgttggcaaggcacagaagaaatcagagcgggaagcagat
cttagagccaaatttgaacaagaacgagctagtcgatttgagaaattaaaaggtgctaac
ttgtatttgaaaaatctggatgacagtgtgaatgatgaaaatctgaaagaattattcgta
gagtacggaaccataacatcctgcaaggtgatgcgtgatgcaaaagggagtagcaagggt
tctggatttgttgccttctccaccccagaggaagctacacgagcgttgaatgagatgaac
ggcaagttgataggaagaaaacctttatttgtcgctgttgcccagcgcaaggatgaaaga
agagtgtggctacagcagacacattttgctcggatgcgaccaactgggctaatgactcct
cctcctggaggtatgcctgggtatcacactggggcacctcgacttgcacctccgcaggtc
tactttagtcaaggtgtagcaactcaagctgctggatttggcttccagcaacaattcatg
cccggacttcgtccaggtgttggtccgaatttcttcttgccctatcagtttcagcatcat
caaggacaacacggacgtattggtggaaggagaggaggatatcctcaacagcagcatcag
tggaactctggtcgattcaatccgaatggacgaaatggcatgcatcctagcatccctcaa
ggtatgatgggatcaattatgcgagcgccatttgatgcttcttctgctatgacaactcct
cccttggacatccaacgctctaacccagtgccaccgtcaacacttgcttcttctttggcc
tttgcttctccagaagatcagcacgcgatgcttggagagcagttatttccactagtggaa
cacattgaacgcgatcatgctggtaaagttactggaatgttgcttgagatggatcagact
gaggtgcttcatctcattgagtcccctgatgctcttaaggagaaagtctccgaggctatg
gatgttctttgcgtggagccagctagtgttggtgataaatttggatcgctcattctgaat
gaatga
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