Solanum stenotomum: 125856645
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Entry
125856645 CDS
T08385
Name
(RefSeq) protein CHROMATIN REMODELING 25
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sstn
Solanum stenotomum
Pathway
sstn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125856645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125856645
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
125856645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SLFN-g3_helicase
AAA_22
DUF7231
Motif
Other DBs
NCBI-GeneID:
125856645
NCBI-ProteinID:
XP_049392192
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All DBs
Position
2:complement(16527275..16540035)
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AA seq
952 aa
AA seq
DB search
MEDEGEALSASSDKSLREPEDDIDCVSNSGEDDDDEWNVESQAGTSSPDEDRKSQNVDAL
VRGNLIVKRQSLLPRVYSVTDAAANLRKPFKPPSSNGYSSSNEHLARRLCARKRFVPWGS
TSPTLIAITNRLKAPEAAEIDVVEDNLELPPGVEPLVLWQPEEIVEEGYSLVPIIVDPLL
VRFLRPHQREGVQFMFDCVSGALSSFNINGCILADDMGLGKTLQSITLLYTLLRQGFDGK
AMVRKAIIVTPTSLVSNWEAEISKWVGERVKLVALCESTRDDVVSGIESFINSRSNIQVL
IVSYETFRMHSSKFSNSGSCDLLICDEAHRLKNDQTLTNRALASLACKRRVLLSGTPMQN
DLEEFYAMVNFTNPGILGDAAHFRRYFETPIICGREPTATEEEKKLGSDRSAELSSKVNQ
FILRRTNALLSNHLPPKIIEVVCCKLTPLQSELYNHFIHSKNVKRAIAEEAKQSKILAYI
TALKKLCNHPKLIYDTIRGGSPGTSGFEDCIRFFPPEMFSGRCGSWTGGAGLWVELSGKM
HVLARLLAQLRQKTDDRIVLVSNYTQTLDLFSQLCRERRYPFLRLDGTTSISKRQKLVNH
FNDPAKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYI
YRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQTDSDIQGNCLSAEDLRDLFTFHDSRSEIH
EKMSCDRCQPDAVMPDDNIIAELHTQGHQPDQEDIGGFAGVAGCLHTLQSSEKQIGAPKE
EDLASWGHHFSPKSVPDVIFQSAAGNEVSFVFTCQVDGKLVPVESILKSKQEVENRDSPH
FKEMLMRKATFSSPRQAPSLKTMSSSMPSSEKENSFPKQDLILQAQALSASTPNGTSMST
LPAFFKPLQKPRSKLNRPLEDTKIYEKSKLSSENLLPKKRLSPDYIYDDDFA
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgagggagaggctctttcagcatcgagcgacaaatcccttagagagccagag
gatgacatcgattgcgtatctaatagtggcgaggacgacgacgatgaatggaatgtagaa
tctcaggcgggtaccagttcgccagatgaagaccgtaaatcgcaaaatgttgatgctctt
gtgaggggtaaccttattgtgaaaagacagtccctacttccacgagtctattcagtgaca
gatgcagcagccaatctccgaaagccatttaaacctccaagctccaatggttacagtagt
agcaatgagcatctagctcgccgtctttgtgctcgtaaaaggtttgtgccatggggttca
acaagtccaacattgattgctattacaaacaggctgaaagctccagaagctgctgagata
gatgtggtggaagacaatttagaactgccacctggtgttgaacctctggtgttgtggcag
cctgaagaaattgtggaggaaggctatagtttagtacctataattgtggatccattgctt
gttaggttccttcgtcctcatcaaagggaaggggtccagttcatgtttgactgtgtgtca
ggtgcacttagtagcttcaatattaatggatgcattttggctgatgatatgggtttgggg
aagactctgcaatcaatcacactactttacactcttcttcgccagggatttgatggaaaa
gctatggtcaggaaggcaataattgtgacccctactagtctcgttagtaattgggaggcc
gaaatcagtaaatgggttggagaaagagttaaacttgttgctttatgtgaaagcaccaga
gatgatgttgtgtctggcatagaaagttttatcaattcccgtagtaatatacaggtttta
attgtttcctacgagacatttcggatgcattcttcaaaattcagtaattctggatcatgc
gaccttctcatatgtgatgaggctcacagattgaaaaatgatcaaacactgactaatcga
gcgttggcttctctagcatgcaaacgccgggttctgctatcagggactccaatgcaaaat
gatctagaagagttttatgccatggttaatttcaccaatccgggtatcttgggtgatgct
gcacactttcggcgttattttgagacaccaataatatgtggtagggaacccactgccaca
gaggaagagaagaaactaggatctgaccgctctgctgaactgagttccaaagttaatcag
tttattttgaggaggacaaatgcgttattgtcaaaccacctaccaccaaagataattgaa
gttgtttgttgcaagctgacaccactccagtcagagctgtacaatcattttatacattca
aaaaatgtgaaacgagctatcgctgaagaagcaaaacaatcaaaaatcttagcttacata
acagctctgaagaagctttgcaatcatccaaagctgatatacgacacgatacgaggtgga
agtccagggacatcgggttttgaggactgcatccgctttttccctccagaaatgttctct
ggaaggtgcggctcatggacgggtggcgctggattgtgggttgaactttcagggaaaatg
catgtcttagcccggctactggctcaacttcgtcagaaaacagatgataggattgttttg
gtttccaattacacacagacactggaccttttctctcaattatgccgtgaaaggagatat
cccttcttaagacttgatggaactacatcaattagtaaaagacagaagctagttaatcat
ttcaacgatccagcaaaggatgagtttgcatttctgttgagcagcaaggctggaggttgc
ggtcttaatttgattggtgggaaccgtctggttttatttgatcctgactggaatccagcc
aatgacaaacaggcagctgcaagagtctggagagatggacaaaagaagagggtctacatc
tataggtttttgagtactggaactattgaggaaaaggtttaccagcgtcagatgtcaaag
gaaggtcttcagaaagttattcagcaggaacaaacagattctgatatccagggaaactgt
ctctcagcggaagacctgcgggacctgttcacatttcatgatagtaggtctgagattcat
gaaaaaatgagctgcgaccgctgccaaccagatgcagtgatgccagatgacaacatcata
gctgagttgcacactcagggtcatcagcctgatcaagaggatattggggggtttgcaggt
gtagctggttgcttgcatacattacaaagctcagagaagcagataggagctcccaaggaa
gaggacttggccagttggggtcatcatttttccccaaaatcagtaccagatgtaattttc
cagtccgcagcaggaaatgaggtttcgtttgttttcacttgccaagtggatgggaaactc
gtgcctgttgaatcaattctaaagtcaaaacaagaggtggaaaatagagattcacctcat
ttcaaagaaatgcttatgagaaaggccacattttcatctccacgtcaagcaccatcacta
aagacgatgtcatcaagcatgccgtctagtgagaaagaaaactcatttccgaaacaggat
ttgatattgcaagctcaagcactgtcagcatcaactcctaatggaacttctatgagtaca
ttacctgcattttttaaacctttgcaaaagccaagaagcaagttaaatagacctttagaa
gatactaaaatatacgaaaagagcaaactctcttccgagaatcttttgcccaaaaagaga
ttatctcctgattacatatatgatgatgattttgcctag
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