Solanum stenotomum: 125857170
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Entry
125857170 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125857170
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
sstn03015
mRNA surveillance pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125857170
09122 Translation
03013 Nucleocytoplasmic transport
125857170
03015 mRNA surveillance pathway
125857170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125857170
03041 Spliceosome [BR:
sstn03041
]
125857170
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125857170
Spliceosome [BR:
sstn03041
]
Complex C
Other components
EJC/TREX
125857170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
125857170
NCBI-ProteinID:
XP_049392808
LinkDB
All DBs
Position
2:9235560..9243224
Genome browser
AA seq
800 aa
AA seq
DB search
MSDYPVLDNLPIDKWKVPALREELKRRNLMTKGLKDDLVNRLNNAIHRERGEPEVEESTE
INPDILEWNNKSMGHPQNKVIKGSDRDTDPANATKVLDEVATGGTDDVSGVREHSEASVG
STSVINEIVSTDQFVEVKIDKKHEVIDSSLNNDVADEVSGVRYAAIQSSGTVQDIEDMRI
SSSEGVLEDNLRRLENDAEVTPVTSKDALGNNSIKLEDEGLKLSGMDAEYDKSNPDTQVY
EVNPDLGSQVKSDAFSTDTLPINENNDLNDNLNADNVKLVTEVVRQEKESPSKDLSDVGS
IYPLDDQMPHEMQGHVGETVDDKSSEVKFSMKKAIADQVSVAVTKVEHGLESNTLNNSEQ
KDVQFVKARTLGDVIDPSLSPKKVEVSAEDKHCIAASNDDRKVLSKISEVVDDQNMEKIN
LDQSSADDSMEEDVVETKHVAFDHISKENDKTEESITGMTKEPKVVRNGSSDATQQDNPS
EKVESPQETKDGSPELSEKRKFQVGDGSKEPAKRQRRWNTENLNTAEPQNSSIALSENLV
QTIPVKPIFGRTDSTVSEDAPKERLVPKSSKTATNSLKIENFLRPFTLKAVQELLARTGE
VCSFWMDQIKTHCYVTYSSVEEAIETRNAVYNLQWPPKGGRLLVADFVAPQQVQTKIDGR
EPATPATNRSPAVPPASSSVQAPPAWQQVESEHPLTRQPPPAPHTALPIKERLAPPAWQQ
GRKQQVESEHPLTRQAPPAPPTATPMKERLAPPVADKNDPPVITLDDIFRKTKAAPRIYY
LPLTDEEVAKKLASRGGTEN
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactatcccgtgcttgataatctccccattgataaatggaaggtaccagcatta
agggaagagcttaagaggaggaacttaatgacaaaaggtttgaaggatgatcttgttaat
cgattaaataatgctatccacagagaaagaggagaacccgaggttgaagagagtactgaa
ataaatcccgatattcttgaatggaataataaaagtatggggcatccccaaaacaaagtt
attaagggttctgatcgtgatactgatcctgccaatgccaccaaagtcttggatgaggtt
gcaactgggggtactgatgacgtttctggagtaagagaacattcagaggcttctgttggt
agcactagtgttataaatgagattgtgtctactgatcaatttgttgaagtcaaaattgat
aagaaacacgaggttatcgattcttctctgaacaacgatgttgctgatgaggtatctgga
gttaggtatgctgctattcagagcagtggcactgtacaggacattgaggatatgagaatt
tcatcttctgagggagtgcttgaggataaccttaggagactagagaatgatgccgaggta
accccagtaacatccaaggatgccttgggaaacaatagcattaagttggaggatgagggt
ctgaaactctcaggcatggatgctgagtatgataagtccaatccagacactcaggtatat
gaggtcaaccctgatttagggtctcaagtaaaatctgacgcattttctactgatactttg
cccattaatgaaaataatgatttaaatgataatttgaatgctgataatgttaaattagta
actgaagttgttaggcaagagaaggagtcacccagcaaagatctgtcagatgttggtagc
atttatccattggatgatcagatgccacatgagatgcagggtcatgttggagaaactgtt
gatgacaaatcttcggaggtgaaatttagcatgaaaaaggccattgcagatcaggtttct
gttgctgttaccaaggtagagcatggtttagaaagtaacacattgaataatagcgagcaa
aaagatgttcagtttgtaaaagctagaactttaggtgatgttatagaccctagtttgtca
cccaagaaagttgaggtatctgctgaagataaacattgtattgctgcttccaatgatgat
agaaaagttttgagcaagatatctgaggtagttgatgatcagaatatggaaaagataaat
ttggatcaatcttcagctgatgattccatggaggaggatgtagtagagacaaagcatgtg
gcttttgatcatatttctaaggagaatgataagactgaagagtctattacgggaatgaca
aaagagcccaaagttgtacgaaatggctcttctgatgcaacacagcaagacaatccttct
gagaaggttgagtctcctcaagaaactaaagatgggtctcctgaattgtcagagaagaga
aagtttcaagtaggagatgggagtaaagagcctgcaaaaaggcagcgcagatggaacact
gagaatttgaatactgctgagccacaaaattcaagtattgcattatcagagaacttggtt
cagaccatccctgtcaagcctatctttggcaggaccgactctacagttagtgaggatgca
cccaaggagcgccttgtaccaaagtcttccaaaacagccactaattctctcaaaattgag
aacttcttgcggccctttacgctgaaagctgtgcaagagctccttgcaagaactggtgaa
gtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggta
gaggaagccatagagacccgaaatgctgtttacaacctccaatggccacctaaaggaggt
cgtctcctggttgcagattttgttgctccccaacaggtgcaaaccaagatagacggacgg
gagcctgctactccagcgacaaatcgcagtcccgcagtgcctccagcttcatcctctgtt
caagcaccacctgcttggcagcaggttgagtcagaacatccactcacgcgccagccacca
cctgctcctcatactgcgctaccaataaaagagaggttggctccacctgcttggcagcag
ggtcgcaaacaacaggttgagtcagaacatccactcacgcgccaggcaccacctgctcct
cctactgcgacaccaatgaaagagaggttggctccacctgttgctgataaaaatgacccc
cctgttattactttggatgacatcttcagaaagaccaaagccgctccccgtatctattat
ttaccgctgactgatgaagaagttgctaaaaagcttgccagtagaggaggtactgagaac
tag
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