Solanum stenotomum: 125857562
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Entry
125857562 CDS
T08385
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sstn03036
]
125857562
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
125857562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
Cnd1
PHD
PDS5
Prok-RING_1
PHD_2
zf-PHD-like
IFRD
Motif
Other DBs
NCBI-GeneID:
125857562
NCBI-ProteinID:
XP_049393118
LinkDB
All DBs
Position
3:43205830..43224180
Genome browser
AA seq
1788 aa
AA seq
DB search
MANSSGNSGVPQGISLSNTVHSEIAPSLPLPSLPVFCGALDHELRLFDERSESRSLNRSD
ILIHANKIADLLHNTDVSYLNLRADASPQSHGFVGHLDLHNEVLTCNSEAFALINAAHCS
SFSGPIKETARSRKANSNSLESIPAVQLPQQGTVEIPNCQHDHVISDVTASSRKPKVKKK
GRESTLLSSGPDASECQDAVAAGFCEMLEDFCGRAEIFSDEREEREFLAVSLADLKVVLR
EITSIRAKKALNSIPVDNLVRFLRILDHQIHRAEGLSINDCEHMDAEVVSSIFCALESIH
AALAIMAYNGMPKQLYKEEIIERIVEFSRHQVMDVIFGSDPVYRALHKPPEIGIPEGEED
EEVNGDFVSPNRKKRSTRSVKPRKSTSNKVSSAVSNILQKLDVILGFLKELCTIERLPDS
CIIQLIKTCFTTFVVENIQLLQMKSISLISGIFYAYTQHRVSIMDEALQILLKLPSSKRM
PRTYPLPDEEQRQIQFITALLIQIVHSSSNLPDVLRESADSPSLEVSIDASYPTKSFESV
TEACCLFWSRVLQRLTNTKNQEAAELKTMIENLVIDLLTTLNLPEYPASAPLLEVLCVLL
LQNAGLKSKDISVRSMAIDLLGTIAARLKQDAVRCREEKFWIVKELRSGELIDRNPPKDA
CSVCSDTRIDKSLVQCHGCQGLFHLNCTGIRGHDIPNRGFYCQMCFSKKQLLVLKSLCES
QSNDAGQNNRTNSGKTSQVTEAITNLEIVQQLLLNYLHDAATVDDLHLFTRWFYLCLWYK
DDPNSEQKFMYYVARLKSQAIVRDSGSLSSLMTRESAKKITLALGQNSSFSRGFDKILQV
LLASLRENSPIIRAKALRAVSIIVEADPEVLGDKLVQTAVEGRFCDSAISAREAALELVG
RHIASYPDVGLKYFEKLAERIKDTGVSVRKRAIKIIRDMCTSNSNFSELTTACVEIISRV
NDEEASVQDLVCKTFYEFWFEEPSGSQHHYFGDGSSVPLEVAKKTEQIVQMLRRMPSLQL
LVTVIKRNLALDFFSQSAKAVGINPASLASVRRRCELICKCLLEKILQVTEMNTGEGEVL
MLPYMRLLHAFCVVDPTLCAPASDPSQFVITLQPYLKSQADNRVAAQLLESIIFVIDSVL
PLLRKLPQSVAEELEQDLKQMIVRHSFLTVVHACIKCLCSVSNVAGRGSTIVEHLIQLFF
KRLDALGFSNKQHFQQVGRSLFCLGLLMRYSSSLLHASVSSNNLHVSSSLNLFKKYLQAE
DFVIKVRSLQALGYVFIARPECMLEKDVGRILEATLSSNTDTRLKMQSLQNMYEYLLDAE
SQMGTNNASENEVANTPVGGPSVPVAAGAGDTNICGGIVQLYWAKILERCLDVNEQVRQS
SLKIVEVVLHQGLVHPITCVPSLIALETDPQEVNSKLAHHLLMNMNEKYPSFFESRLGDG
LQMSFMFIQAMNKGDSQSLKPQSKAPGIMSGKSEPGSFTHARLGVSRIYKLIRGNRISRN
KFMASVVRKFDTPSWGDLVGPFLIYCTEILASLPFTSPDEPLYLIYSINRIIQVRAGTVE
ANMKGFLQFLQAGYQKLNVSGGIQTEPNQPIRCQTETMVASTKIEEGLEGDHVGVDYGSV
EPYMPHLASLNPHGISNADLQMIQVECLAAGALQLLLRLKRHLKILYDLNDARCQAYSPN
DPLKPGESLSKQSLPFNVNEINIEHPKNYEDFVRRYQEFKNALKEDTVDYAIYTANIKRK
RPAPRRNRKSGRMMGGDDEDYEDDEDWGSGMKSSNSGRRSSSRLRQHL
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atggcgaattcaagtggcaatagtggtgttcctcaaggtataagtttgtcgaatacagtg
cactctgaaattgccccgtctttgcctttgccgtcacttcctgtcttctgcggcgcactc
gatcacgaacttaggttgttcgacgagcggagtgaatccagatcgttgaatcggagtgac
atactcattcacgctaacaaaattgctgatctgcttcacaatacagacgtttcttatttg
aaccttagagctgatgcaagtcctcaatctcacggctttgtgggacaccttgacctgcat
aatgaagtgcttacatgtaactctgaagcctttgctctaataaatgcagcacattgttca
agtttctcaggccccattaaggagactgcacgaagtcgcaaggctaattcaaattctctt
gagagtatacctgctgtccaacttccacaacaaggcactgtagagatccccaattgtcag
cacgaccatgttattagtgatgttactgcatcttctaggaaaccaaaagtcaagaagaaa
ggaagggagagcaccttactatcaagtggccctgatgcttctgaatgtcaagatgcagtt
gcagcaggtttttgtgagatgttggaagatttttgtggcagggcagaaatttttagtgat
gagcgggaggaaagagaatttttagcagtgtctctggcagatcttaaagttgttctgagg
gagatcacatctatccgagcaaagaaagcactgaattcgattccagttgataatctagtg
agatttcttaggatcttagatcaccagattcatcgagcagaaggtttatcaattaatgat
tgtgaacatatggatgcggaggttgtgtcatcgattttctgtgctttagagtccattcat
gcagctttagctataatggcttacaatgggatgcctaagcaattgtataaagaagaaatc
attgaaagaatcgtggagttctcccggcaccaagttatggatgttatctttggtagtgat
cccgtgtaccgtgcactgcacaaaccacccgagatagggattcctgaaggtgaagaagat
gaagaggtcaatggggattttgtttcaccaaataggaagaagagatctactaggagtgtg
aaaccaaggaaatcaacatcaaacaaggtttcttctgctgttagtaatatacttcagaag
cttgatgtgattcttggttttcttaaggagttgtgcactatagagcgtctaccagacagt
tgcattattcaacttattaagacttgtttcacaacatttgtggttgaaaacatccagctt
ttgcaaatgaaatcaataagcttaataagtgggatattttatgcatacacacagcatcgt
gtttctataatggatgaggcacttcagattcttttaaaattaccctcttctaagcgcatg
cccagaacttatcctctacctgatgaagagcagaggcaaatccagttcatcactgctctt
ttaattcaaatagttcacagcagttcaaaccttccagatgttttgagggaatcagctgac
agtccttctctagaagtttcaattgatgccagttaccctaccaaatcttttgaatcagtc
acggaagcttgctgtcttttctggagtcgtgttcttcaacgtctaacaaacacaaaaaat
caggaggcagctgagttgaagacaatgattgagaatcttgtcattgatctgttaactact
ttgaatttgcctgaatatccagcctctgctcctcttctggaggttctttgtgttttactc
cttcaaaatgctgggttgaaatctaaagatatttctgttcgttcgatggccattgacctt
cttggcacaattgctgcaaggctgaaacaagatgcagtccgctgtagggaggagaaattc
tggatagtaaaggagttgagaagtggggaattgattgaccggaatcctcccaaggatgca
tgttctgtttgttcggataccaggattgacaaatcacttgttcaatgccatggttgtcag
ggactatttcatcttaactgtactggaatcaggggtcatgatattccgaatcgcggcttt
tattgccagatgtgtttttccaagaagcaacttcttgtactgaaatcactatgcgagtct
cagtccaatgatgctgggcaaaataaccgtactaactcaggaaaaacatcacaagttact
gaggcaatcacaaatttggagattgttcagcagctactactgaattatctccatgatgct
gcaactgtggatgatttacatctatttactcgctggttctatctttgtctttggtacaaa
gatgaccctaattcagagcaaaagttcatgtattatgttgcacgattgaagtcacaagca
attgtgcgtgactctggttctctttcttcgctgatgacaagagagtcggcaaaaaagata
actttagcattgggacaaaatagttctttctctagaggatttgacaagattctgcaagtg
cttctggcaagtttgcgggagaactctccaatcattcgtgcaaaggcattgcgagcagtt
agtatcattgttgaggctgatccagaggttttgggtgataagctcgtccaaacagcagtg
gaagggaggttttgtgactctgctatatctgcccgagaagctgcgttggaacttgtaggc
aggcatattgcttcatatcctgatgttggtctgaagtactttgagaagttggcggagaga
ataaaggatactggagtaagtgtgcgaaagcgtgctatcaaaatcatacgggacatgtgc
acttcaaattctaacttctcagagttaactactgcttgcgttgaaattatttcccgagta
aatgatgaggaagccagtgtacaggacctggtctgcaagacattttatgagttttggttt
gaagaaccttctggttcacaacatcattatttcggagatggaagttctgttccacttgag
gtggctaagaaaacagagcaaattgttcagatgctgagaaggatgcccagtcttcaactt
cttgtaactgtgattaaacgcaacttagcccttgatttcttttcacaatctgctaaagct
gtcggtatcaaccccgcgtcccttgcctcagtccgtaggcgctgtgagttgatatgcaag
tgcttacttgagaaaatactgcaggtgacagagatgaatacgggagaaggagaggtgctt
atgctaccatacatgaggctcttgcatgccttttgtgttgttgatcctactctatgtgca
ccagcttctgatccttcccagtttgtgatcacgctacaaccttatttgaagagtcaggct
gataatcgagttgcagcccagcttttggagagtataatctttgtgattgattctgttttg
cctttactaaggaagcttcctcaaagtgttgctgaagaacttgaacaagatctgaagcaa
atgattgttcggcattctttcttgacagttgtccatgcttgcatcaagtgcctctgctct
gtaagtaatgttgctggaagaggctcaactattgttgaacaccttatccagttattcttc
aaacgccttgatgccctaggtttcagtaacaagcagcactttcagcaagtgggccggtct
cttttctgcctgggtttgctaatgcgttacagtagctcattattgcatgcatctgtttcc
agtaacaacttacatgtttctagcagcctcaacctatttaagaaatatcttcaggccgaa
gactttgttatcaaggtccgctcattgcaggcactgggctatgtttttattgctcgccct
gaatgtatgctggaaaaggatgtagggagaattttagaggccacactttcttctaatact
gatacacggctcaagatgcaatcactgcaaaacatgtatgagtatcttcttgatgctgaa
agtcaaatgggaacaaataatgcaagcgagaatgaagttgctaatacaccagttggtggc
cctagtgtgcctgttgctgcaggggctggtgataccaacatttgtgggggaatagttcag
ttgtattgggctaaaatcttagaaagatgcctggatgtgaatgaacaagtgcgtcagtct
tctcttaagattgtggaagttgtactgcatcaaggtcttgttcatcctattacctgtgtt
ccctctttgatagctcttgaaacagatccgcaggaggtgaactcaaagctggctcatcat
ttgttgatgaacatgaatgagaagtatccatccttctttgagagccgtcttggtgatggt
ctacaaatgtcatttatgttcatacaagccatgaataaaggtgattctcaaagtttaaaa
ccccagtccaaagctccaggtatcatgtcaggaaagtcagagcctggctcatttacccat
gcaaggctcggggtatctcgaatctacaagctcatccgtggaaatcgtatttcaaggaac
aaatttatggcctcagttgtgcgcaaatttgatacgccaagctggggtgatttggtgggc
ccatttttgatatactgcaccgaaattcttgcttcgcttccattcacgtcgcctgatgag
cccctttatttgatctattctataaatcggattattcaagttagggctggcacggtggag
gcaaatatgaagggatttttacaatttttacaagcaggctatcaaaaattaaatgtaagt
gggggcattcaaacagagcctaatcaacctattaggtgtcagactgaaacaatggttgcc
agcacaaaaattgaggaagggttagaaggtgaccatgttggtgtagattatggatcagtg
gagccatatatgccccatttggcatcattaaatccacatggcatatcaaatgctgatttg
cagatgatccaggtggagtgtctggcagctggtgctttacagttgcttctgaggctaaag
aggcacctcaagattctatatgatctaaatgatgcccgttgccaggcatattctccaaat
gatcccctaaaacctggggaaagtctttcaaagcaaagtcttcctttcaatgtgaatgaa
attaacattgagcacccaaagaattatgaagactttgtccggagatatcaggaattcaag
aatgccttgaaggaagatacagtggactatgcaatctacacggcgaacattaaaaggaaa
cgccctgctccaagaagaaacaggaaatctggtcgaatgatgggtggtgatgatgaagac
tatgaagacgatgaagattggggtagtggaatgaagagtagtaatagtggcagaagaagc
agtagcaggttaaggcagcacttgtga
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integrated database retrieval system
