Solanum stenotomum: 125857694
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Entry
125857694 CDS
T08385
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125857694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125857694
03009 Ribosome biogenesis [BR:
sstn03009
]
125857694
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125857694
Spliceosome [BR:
sstn03041
]
Complex A
U1 snRNP components
U1 related factors
125857694
Complex B
125857694
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Helicases
125857694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125857694
NCBI-ProteinID:
XP_049393262
LinkDB
All DBs
Position
3:complement(10417923..10426751)
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AA seq
650 aa
AA seq
DB search
MSYPNYDSRYGDSGSYRQRRSDLMGPQPSMYPRPMSGGGAASYGRGGSLPYGGPQAGGPP
PMDGGSRGGMGGSGRVGGGYPPFEGGPSRGSDIGRFGGGGVDRVANGGMGERPGRFGAGA
SYSGGRSGGGRGGRGFDGGYSGGRGGGGGRFSSDGGRGSSGGRGGRHGRSRDDLDNLTLP
KQDFGNLVPFEKNFYVENHAVRAMTDQEVAHYRARRDITIEGQDVPRPIQMFHEANFPDY
CLEVISRLGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLAQ
GDGPIVLVLAPTRELAVQIQEEAVKFGSRANIRSTCIYGGAPKGPQIRDLRRGVEIVIAT
PGRLIDMLEAQHTNLKRVTYLVLDEADRMLDMGFEPQIRKLISQIRPDRQTLYWSATWPK
EVEALARQFLRNPYKVIIGSPELKANQSIRQVIEVVTDLEKYSRLIGLLKEVMDGSRILI
FVETKKGCDQVTRQLRMDGWPALSIHGDKSQDERDWVLADFKTGRSPIMIATDVAARGLD
VKDIKCVINYDFPSSLEDYIHRIGRTGRAGATGTAYTFFTHANAKFTRELIKILQQAGQI
VPPQLSALARSSGPSTGGSNFRSRGRGGFGNRGQRSGSNVIPIGGSRRPW
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgagttaccctaattacgactccagatacggtgattcaggctcctatcgacagcgacga
agtgacctaatgggtccgcagccttccatgtatccacggcctatgtctggtggaggtgcc
gctagctacggccgtggtgggtcgcttccttatggaggtcctcaggcagggggtccaccg
cctatggatggtggttctagagggggtatgggtggatctggacgtgttggtggtgggtat
ccaccttttgagggtgggccttcaagagggtcagatataggcaggtttggcggtggagga
gttgacagagtggctaatggtggtatgggagaacggcctgggagatttggtgctggggca
agctatagtggaggtaggagtggtggtgggagaggaggtaggggttttgatggaggctac
agtggtggacgaggaggtggaggtggaaggtttagttcggacggaggacgtggtagtagt
ggcggaagaggaggtaggcatgggagatcacgagatgatcttgacaaccttactcttcca
aagcaagactttggaaatttggtaccttttgagaagaacttttatgttgaaaatcatgcg
gtgagggcaatgacagatcaggaggttgctcattatcgtgcacggcgtgacattaccatt
gaaggacaggatgtccctaggccaattcagatgttccatgaggcgaactttcctgattat
tgcctcgaggttatttcaagactaggatttgttgagccaacacctatccaatcacaagga
tggccaatggctttaaagggcagagacttaattggaattgctgaaaccggttctggaaag
actttggcatatttattgcctgctttggtccatgtcagcgcacagccccggttggcacaa
ggtgatggtccaattgtgctggtattagcacctacaagagaattagctgttcagattcaa
gaagaagctgtcaaatttggatcacgtgccaacataagaagtacttgcatttatggtggt
gccccaaaaggacctcaaatccgtgaccttagaagaggagttgaaattgtgatagcaacc
cccggtcggttaatagatatgctggaagctcaacatacgaacctgaaacgagtgacatat
cttgtattggacgaggctgatcgaatgctggatatggggtttgagcctcaaataaggaaa
ctaatttcccagattagaccagatagacaaaccttgtattggagtgccacttggcccaag
gaggttgaagcactggctaggcagtttttacgtaatccctacaaggtcatcattgggtct
ccagaattgaaagcaaatcaatctataaggcaagtcattgaagttgtcacagatttagag
aaatatagcaggttgattgggcttttgaaagaagtgatggatggaagccgaatcctaata
tttgtagaaacaaagaaaggatgtgatcaagtcacaagacaattgagaatggatggatgg
ccagctttatccatccatggtgataaaagccaggatgagagggattgggtccttgctgat
ttcaaaactggaagaagtcccataatgattgccactgatgttgctgcacgtggtcttgat
gttaaggacataaagtgtgttatcaactatgatttcccttcaagtctcgaggattatatt
cataggattggcagaactggacgtgctggtgcaacaggaactgcctatacatttttcact
cacgcaaatgccaagtttaccagagagcttatcaagatcctgcagcaggcaggacaaatc
gttcctcctcaactttctgcattagcaaggtctagtggtcctagcactggaggaagcaat
ttcaggtctagaggacgaggtggctttgggaaccggggacagagatctgggtctaatgta
attcctattggcggttcaagaaggccttggtag
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