Solanum stenotomum: 125857754
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Entry
125857754 CDS
T08385
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
sstn
Solanum stenotomum
Pathway
sstn03030
DNA replication
sstn03420
Nucleotide excision repair
sstn03430
Mismatch repair
sstn03440
Homologous recombination
sstn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125857754
03420 Nucleotide excision repair
125857754
03430 Mismatch repair
125857754
03440 Homologous recombination
125857754
03460 Fanconi anemia pathway
125857754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sstn03000
]
125857754
03032 DNA replication proteins [BR:
sstn03032
]
125857754
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125857754
Transcription factors [BR:
sstn03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
125857754
DNA replication proteins [BR:
sstn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
125857754
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
125857754
MMR (mismatch excision repair)
125857754
DSBR (double strand breaks repair)
HR (homologous recombination)
125857754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Rhabdo_glycop_CD
Motif
Other DBs
NCBI-GeneID:
125857754
NCBI-ProteinID:
XP_049393341
LinkDB
All DBs
Position
3:7473001..7476503
Genome browser
AA seq
614 aa
AA seq
DB search
MAKTVSPDAISTILANPSPDSSSDLPEIIFQVVDLKPTGNRYMFSANDGKMKIKGILQSS
LSSEVISGSIQNLGLIRIIDYTLNDIPTKNEKYLIVTKCETVSPALEVEYKAEVKSEDTG
IVLKPKQEETGILLKPKQEYQTKSAAQIVHEQSGNMAPSARMAMTRRIQPLVSLNPYQGN
WTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAAKKFFDKFELGKVY
YISKGTLRVANKQFKTVQNDYEMTLNETSQVEEASNEEAFIPETKYNFVPIDELGPYVNG
RELVDVIGVVQSVSPTMSIRRKSNNETVPKRDITIADETKKTVVVSLWNDLATHVGQELL
DMADKSPVVAIKSLKVGDFQGVSLSALSKSNIVVNPDLPEAKKLRSWYDSEGKETSLASI
GSGMSPSAKSGARSMYTDRVSLLHITSNLSLGEEKPMFFSLKAYISFIKPDQTMWYRACK
TCNKKVTEAFGSGYWCEGCQKNDAECSLRYIMALKVSDASGEAWLSTFNEQAEKILGCSA
DELDKLKSEEGEIAYQMKLKEATWVPYLFRVSVAPQEYNNEKRQRITVRAIAPVDYVAES
KYLLEEMSKMNIVM
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaacggtcagcccagatgctatttcaactattttagcgaacccatcgccggat
tcttcttcagatcttcctgaaattatttttcaagtagtggatctcaagcccactggcaac
agatacatgttttcagccaatgatgggaaaatgaagattaagggcattcttcaatctagt
ttgtcttctgaagttatatctgggtctatacagaacctgggtcttattcggattattgat
tacactctcaatgatatcccaactaagaatgaaaagtacttgattgtaactaaatgtgag
acagtgtctcctgctcttgaagttgagtacaaggctgaagtgaaaagtgaagacactggc
attgtcttgaagccaaagcaggaagagactgggattcttttgaaaccaaaacaggaatat
caaactaaatctgctgctcaaattgtacatgaacaaagtggaaacatggcaccgtctgct
cgaatggcaatgacaagaagaattcagccacttgtctctttgaatccttaccaaggaaat
tggaccattaaggttcgagtaactagcaagggtaatatgcgaacttacaagaatgctcgt
ggagaaggttgtgtgttcaatgttgaattgactgatgaggatggtacccaaatacaagct
acaatgtttaatgaagctgcaaagaagttttttgacaagtttgaattggggaaagtatat
tacatttcaaagggaacccttcgagttgcgaacaagcagttcaaaactgtacaaaatgat
tatgagatgactttgaatgaaacttcccaagttgaggaggctagcaacgaagaagctttt
attccagagacaaaatataactttgtcccaattgatgaattgggaccatatgtcaatggc
agggagcttgttgatgttattggggtggtccaaagtgtatctccaacaatgagcatacgg
aggaagagtaacaatgagacagtccctaagcgtgatataactattgcagatgagacgaag
aagactgttgttgtttctctttggaatgatcttgccacccatgttggacaagaactgcta
gacatggctgataaatctccagtagttgcaatcaaatcccttaaagttggagacttccaa
ggagtgtctttatcagcattaagcaaaagcaatattgttgtgaatcctgatttacctgaa
gccaaaaaattgagatcttggtatgattctgaaggtaaagaaacttcattggcatctatt
ggttctggcatgagcccctctgccaagagtggagcaagatctatgtatactgatagggtt
tccttgcttcatataaccagtaacctctcccttggtgaggagaagcctatgtttttcagc
ttgaaagcatatataagtttcattaagcctgatcaaaccatgtggtatcgggcttgcaag
acatgcaacaagaaagttactgaagcttttgggtctggatattggtgtgaaggatgccag
aagaatgatgcagagtgtagtttgagatatataatggcattgaaagtgtctgatgcaagt
ggtgaagcatggctgtctacattcaatgagcaagcagagaaaatacttggatgctctgct
gatgaacttgacaagctgaaatcagaggaaggagaaattgcatatcaaatgaaattgaag
gaagctacatgggttccttaccttttccgagtcagtgttgccccacaagagtacaacaat
gagaaaagacaaaggataacagtcagggctattgctccagttgattatgttgcagaatcc
aaatacttgctggaagaaatgtctaagatgaacattgttatgtaa
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