Solanum stenotomum: 125857846
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Entry
125857846 CDS
T08385
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
sstn
Solanum stenotomum
Pathway
sstn03082
ATP-dependent chromatin remodeling
sstn03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125857846
03083 Polycomb repressive complex
125857846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sstn03036
]
125857846
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
125857846
Histone modification proteins
HAT complexes
HATB complex
125857846
HDAC complexes
Sin3A-HDAC complex
125857846
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
125857846
PRC2.2
125857846
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
125857846
Heterochromatin formation proteins
Other heterochromatin formation proteins
125857846
Chromatin remodeling factors
NuRD complex
125857846
NuRF complex
125857846
NuRF complex (fruit fly)
125857846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
125857846
NCBI-ProteinID:
XP_049393456
LinkDB
All DBs
Position
3:1557012..1568609
Genome browser
AA seq
460 aa
AA seq
DB search
MKDKTEKPGQQPPTVDERYTQWKSLVPVLYDWLANHNLLWPSLSCRWGPQFEQATYKNRQ
RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAQHISQFNEEARSPFVKKFKTIIHPGEVNR
IRELPQDSKIVATHTDSPDVLIWDVESQPNRHATLGVNNSRPDLILTGHQDNAEFALAMC
PSEPFVLSGGKDKSVVLWSIHDHVSTLAAADQGETKSPGSGAGNSKPSAEGPTVQARGIF
QGHDDTVEDVQFCPSSAQEFCSVGDDSCLILWDARAGSSPAVKVEKAHNADLHCVDWNPH
DVNYILTGSADNTVRMFDRRNLTSGGVGSPIHIFEGHAAAVLCVQWSPDKSSVFGSSAED
GILNIWDHERIGKREDGASRKAPASPPGLFFRHAGHRDKVVDFHWNVADPWTIVSVSDDG
ESTGGGGTLQIWRMIDLIYRSEDEVLDELDKFKSHLLTCS
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacaaaacggagaaacccggacaacagccgccgacggtcgacgaacggtacaca
caatggaagtctctggttcctgttctctacgattggcttgcgaaccacaatctcctttgg
ccttcactctcttgtcgatggggcccccagtttgagcaagcaacttacaaaaaccgccag
cgcctctacctttccgagcagacggatggtagcgttccaaatacccttgtcatagctaat
tgtgaggttgtaaaacctagggttgcagcagcacaacacatatctcagttcaacgaagaa
gcacgttcgccttttgtaaagaagtttaaaactattattcatcctggtgaggtgaatcga
attagggaactgcctcaggatagcaaaatagtggccacacacactgacagtcctgatgtt
cttatttgggatgttgagtctcagcctaatcgccatgctaccttgggagtaaataattct
cgaccagacttgatcttgactggacatcaagacaatgctgaatttgcgctcgcaatgtgc
ccttctgagccttttgtgctctctggagggaaggacaaatcggttgttctgtggagcatt
catgatcatgtgtctactttggcagcagcagaccagggagaaacaaagtctcctggatct
ggagcaggtaactcgaaaccttctgcagaaggccctactgttcaagctcgaggtattttc
caaggacacgatgatactgtagaagatgttcagttttgcccttccagtgcgcaggagttt
tgcagtgttggagatgattcctgccttatactctgggatgcaagagctggttcttctcct
gctgtcaaggtagaaaaggctcataatgctgatcttcattgtgttgattggaatcctcat
gatgtaaattatatattgaccgggtcggcagacaacaccgttcgcatgtttgatcgacga
aacctcacttctgggggagtgggatcgcctatacatatctttgagggccatgctgctgct
gtgctttgtgtacagtggtccccagataaatcatcagtctttggaagttcggcagaagat
ggtatcctgaacatctgggatcatgaaaggattggtaagagggaggatggtgctagtagg
aaagctccagcatctcctccaggcttattctttcgtcatgctggacatagggataaggtg
gtcgacttccactggaatgtagccgatccatggacgattgttagtgtctcagatgatgga
gaaagtactggtggaggtggtacattacagatatggcgaatgattgatctcatttacaga
tcagaagatgaggttctagatgaactggacaagttcaagtctcacctgcttacttgttct
tag
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