Solanum stenotomum: 125857923
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Entry
125857923 CDS
T08385
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125857923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125857923
03012 Translation factors [BR:
sstn03012
]
125857923
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125857923
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125857923
Translation factors [BR:
sstn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125857923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
Dicer_dimer
ATPase
NACHT
PhoH
AAA_11
Motif
Other DBs
NCBI-GeneID:
125857923
NCBI-ProteinID:
XP_049393535
LinkDB
All DBs
Position
3:complement(4009894..4020720)
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AA seq
1203 aa
AA seq
DB search
MPYTNLIQNCLKVRLKASQFLSTMSTSLQLCPNRFHFETNPLLYRSTQSVIPQKRCLHGS
VGFFCSAKGSSSSSSSSSVVLRRKRHGSSSSSSYPSPYFYQQNLGYGRFAYDECESESES
DRETQSSKQLGESALHNIEEWRWKLSMLMRKKDDQEVVSTDKKDRRDFEHISALATRMGL
HCRQYEKTIVCSKVPLPNYRPDLDVKRPQREVILHYGLQSRVGDLLEAHLSKKSVNKENL
THNASLRGSNDNNSPNDKELHENEKPFARNVVAERILMRRSLEMRNKQGDWQGSPEGQKM
LELRRNLPAYKEREALLRAISENQVVVVSGETGCGKTTQLPQYILEAEIEAARGATCNII
CTQPRRISAMSVAERVAAERGENLGESVGYKVRLEGMRGRDTRLLFCTTGILLRRLLVDR
KLEGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYYGGAPM
IHIPGFTHPVRSHFLENILEMTRYRLTPYNQIDNYGQDKMWKMQKQTIRKRKTQIASAVE
ESLESADFGQYNPLTRDSLSCWNPDSIGFNLIEHVLCHICRNERPGAVLVFMTGWDDINT
VKDQLQAHPLLGDPSRVLLLACHGSMASAEQKLIFDKPEDGIRKIVLATNMAETSITIND
VVFVVDCGKAKETSYDAINNTPCLLPSWISKASARQRKGRAGRVQPGECYHLYPRCVYEA
FADYQLPELLRTPLQSLCLQIKSLQLGSISDFLSKAIQSPEPLSVQNAIEYLKTIGALDE
DENLTVLGHNLSMLPVEPKLGKMIILGVVFNCLDPVLTVVAGLSARDPFLMPFDKKDLAE
SAKAQFSARNFSDHLALVRAYDGWKDAERQQSGYDYCWRNFLSAQTLKAMDSLRKQFLYL
LKDIGLVDSIQSCNAWSNNEHLVRAIVCGGLFPGICSVVNKEKSISLKTMEDGGVLLYSN
SVNAQEPQIPYPWLVFNEKVKVNAVFLRDSTAVSDSVVLLFGGSISGKALDGHLMMLGGY
LEFFMNPSLANTYISLKRELNELVHKKLSDRNFDVGRHGELLEAVKLLVSEDQCEGKFVY
GRKPSPKKSAKELQKNVISTKGSGGENPKSHLQTLLARAGHQSPSYKITQLKNNKFRATV
IFNGLNFAGQPSSSKKEAEKDAAAEALQWLTGETQSSSKVVEHMSALLKKSKSKNQLHST
KWR
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgccttacactaatcttattcaaaactgccttaaggtgaggcttaaagccagccaattt
ctgtccactatgtccacttctctgcaactttgtccaaatcgttttcactttgaaacaaac
cctctactttaccggtcgacacaatctgtaatacctcaaaaacgatgccttcatggaagt
gttgggttcttttgttcagctaagggatcttcttcttcttcgtcttcgtcgtctgttgtg
ttgaggcggaaaagacatggctcatcttcgtcttcttcttatccttctccgtatttttat
cagcagaatttggggtatggaagatttgcttatgatgagtgtgagtctgagtcggagtct
gatcgtgaaactcagtcgtctaagcaattgggtgaatcagcccttcataacattgaagaa
tggaggtggaagctaagcatgctaatgcgcaaaaaagatgaccaagaagtggtctcaacg
gacaaaaaggatcgacgtgattttgagcatatatcagctttggcaactagaatgggttta
cactgccgccagtatgaaaaaacaattgtgtgtagcaaagtcccattgccaaattatagg
ccagatttggatgttaagcgtccacaaagagaggtcatattacattatggattacaaagt
agggtaggtgatcttcttgaagcacatctttctaaaaagtcagtaaacaaggaaaacctg
acacataatgcttccttgagaggaagcaatgacaacaattctcccaatgataaagaactt
catgagaatgagaagccatttgcacgaaatgttgtagcagagagaattctcatgcgaagg
agcttggagatgcgtaataaacaaggagattggcagggatctcctgaaggccagaagatg
ctagaacttcgaagaaatctccctgcatataaagagagagaggcattgcttagagccatt
tctgagaatcaggtggtggttgtgtctggggaaactggatgtggtaagactacccaattg
cctcagtacattttagaagctgagatagaagctgctcgcggagctacttgcaatatcatt
tgtactcaaccaaggcgaatatctgctatgtctgtcgctgaaagagttgctgcagagcgt
ggggagaatctgggagaatctgtgggctataaggttcggcttgagggcatgagagggagg
gatacccgcctcttattttgcacaactggtattcttctgaggagattactggttgataga
aagttggaaggtgtcactcacgttattgtagacgagattcatgaacgcggaatgaatgaa
gatttccttttaattgtccttaaagatctccttccccgtcgacctgaattgaggctgatt
ttgatgagtgctactcttaatgccgagctcttctcttcctattatggtggtgccccaatg
atccatattcctggttttactcatcccgtccgaagtcattttctggaaaatattttggaa
atgactagataccggttaactccatataatcaaattgataactatggtcaagacaagatg
tggaaaatgcagaaacagactattaggaagaggaagacccaaattgcttcagctgttgag
gaatcgctagaatcagctgattttgggcagtataatcctttgactcgggattcactatcc
tgttggaatcctgattcaattggcttcaaccttattgagcatgtgctttgtcacatatgt
agaaacgaaaggcctggtgctgtgttggtttttatgactggttgggatgacattaatact
gtgaaggaccagctgcaggctcatccactgttgggagatccaagcagagttttgctgctt
gcatgtcatggttccatggccagtgcagagcagaaattgatttttgataagccagaggat
ggaatcaggaaaattgtgttagctaccaacatggctgaaacaagtatcaccataaatgac
gtggtttttgtggtcgactgtggaaaggcaaaagagacatcttatgatgcaatcaacaac
actccctgtttgcttccttcttggatttcaaaagcttctgctcggcaaagaaaaggaaga
gctggccgtgttcaacctggcgagtgttatcatctctatcccagatgtgtatatgaagct
tttgcagattatcaactgccagagcttctgagaacacctttacagtccctatgcctgcag
attaaaagcttacaacttggaagtatttcagactttctatccaaggcaatccagtcacca
gaaccactatctgttcaaaatgctattgagtatttgaagacaataggggctctagatgag
gatgaaaatctgacagtacttggacacaacctatcaatgcttccagttgagccaaaactg
gggaaaatgataatattaggtgtagtattcaactgcctggatccagttctgacagttgtt
gctggtttaagtgctagagatccatttttaatgccatttgacaagaaggatcttgctgag
tctgccaaagcccagttttctgctcgaaacttcagcgatcaccttgctcttgttcgggct
tatgacggctggaaagatgctgaaaggcagcaatctggttatgactactgttggagaaat
ttcctttctgcgcaaactctcaaagcgatggactcccttcgaaagcaatttttatatctg
cttaaggacattggtttagttgatagcattcagagttgtaatgcctggagtaataatgaa
catctggttcgagcgattgtatgtggtggactattccctggcatatgctctgttgtgaac
aaggagaagtcaatctcattgaaaacaatggaggatggtggagtccttttatactctaat
tctgtcaacgctcaagaacctcaaattccatacccatggcttgtcttcaacgaaaaagtt
aaagtgaatgcagtattcctgcgtgattctacagctgtatctgattctgtggtactctta
tttggcggaagcatttctggaaaagctctagatggacacttgatgatgcttggaggatac
ttggagtttttcatgaacccctcactggcaaatacctacataagcttgaagagggagctt
aatgaacttgtccataagaaactctcggaccgtaattttgatgtaggaaggcatggtgag
ctattagaagctgttaaattgctggtgtcagaggatcaatgtgaaggtaaatttgtctat
ggtcgtaaaccatcccccaagaagtctgcaaaggagttacagaaaaatgtcatttcaacg
aagggcagtggtggtgagaatccgaagtctcatctccaaacgttgcttgctcgggctggc
caccaatcacccagttataagataacacaactaaaaaataataagttccgcgccactgta
atattcaatgggttaaattttgctggccagcctagcagtagcaagaaggaagctgaaaaa
gatgcagctgctgaagctctgcagtggttgactggtgagacccaatcctcttctaaagtt
gttgaacacatgtcagcacttctgaagaaaagcaagagtaaaaatcaacttcatagtaca
aaatggaggtaa
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integrated database retrieval system
