Solanum stenotomum: 125857935
Help
Entry
125857935 CDS
T08385
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
sstn
Solanum stenotomum
Pathway
sstn00040
Pentose and glucuronate interconversions
sstn01100
Metabolic pathways
Module
sstn_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125857935
Enzymes [BR:
sstn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
125857935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
125857935
NCBI-ProteinID:
XP_049393554
LinkDB
All DBs
Position
3:5991856..5994860
Genome browser
AA seq
407 aa
AA seq
DB search
MMISNSQFYLVTFLVLLCMVSSVWSADIKTFNVIDFGAVGDGRTDDLPAFLKAWEAVCQS
ESSRVILVIPKRKKFLLKPSEFDGPCKPSSIHIQVSGNIIAPNSKWAWDGAATNAWLTFA
NINHLTVNGNGVFDGQGHIWWSNACTNDNTSQETQCKGPTALIFRRCDQLRVRGVTIIRS
ARSHIILTACNEVSIANIRIMSPGDSLNTDGIDVSGSTNVRIHNSLIATGDDCIAIGGGS
SNVSISGITCGPGHGISIGSLGEGGFEVVEDVNVRNCTMKDTLAGVRIKTWQGGEGYARR
IAFEGIVFVAVNNPIIIDQFYCPSRVNCKNDTAAVALSDITFRGILGTSLMDEVINLSCS
ETVGCKNILLDRVYISSVNGNPVHAKCINAHGRYTHTSPAVKCLLPP
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgatgattagtaattcgcagttttacttggtaactttcttggttttgttgtgcatggtt
tcttctgtatggagtgctgatattaaaactttcaatgtcatcgattttggggctgtcgga
gatggaagaactgatgatctcccggctttcctcaaggcatgggaagctgtgtgtcaatcg
gaatccagtcgtgtaattcttgttataccaaaaagaaagaaattcttacttaagccttca
gaatttgatggtccttgcaagccctccagtatacatattcaggtatctggaaatataatt
gcacctaactcaaaatgggcatgggatggagctgcaaccaatgcatggctcacttttgcg
aatattaaccatcttactgtaaatggcaatggggtttttgatggccaaggccatatatgg
tggtcaaatgcttgcacgaatgataacacatctcaagaaacacaatgcaaaggaccaact
gcattgattttcagaagatgtgatcagcttcgagttaggggagtaacgattattagaagc
gctagaagtcatatcatattgactgcttgcaatgaagttagcattgctaatattcgtatt
atgtcccctggtgatagtctcaacaccgatgggattgacgtttccggtagcactaatgta
cgaatacacaactctctcatcgcaacaggtgacgactgtattgcaataggaggaggatcg
tccaacgttagtattagcggcataacatgtggacctggccatggtattagtattggatcc
ttgggagaaggaggatttgaagtagtggaagatgtgaacgtaagaaattgcacgatgaaa
gacaccttagcaggagtaaggattaagacctggcagggaggcgaagggtatgcaaggagg
attgctttcgaaggaattgtatttgttgcagtcaacaatcccatcatcatcgaccagttt
tactgtcccagccgagtcaattgcaaaaatgatacagctgcagttgcattgagcgacata
acattcagaggaatactagggacttccctgatggacgaggtgataaatctgagctgcagc
gagactgttggctgcaaaaacatacttcttgatcgagtgtatatatcatctgttaacggt
aaccctgttcatgccaagtgcatcaatgctcatggaagatacactcatactagccctgct
gtgaaatgtctgctgccgccatag
DBGET
integrated database retrieval system
