Solanum stenotomum: 125858015
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Entry
125858015 CDS
T08385
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
sstn
Solanum stenotomum
Pathway
sstn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125858015
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sstn01002
]
125858015
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125858015
03036 Chromosome and associated proteins [BR:
sstn03036
]
125858015
Peptidases and inhibitors [BR:
sstn01002
]
Metallo peptidases
Family M1
125858015
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125858015
Coactivators
SAGA/TFTC/STAGA complex
125858015
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
125858015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF2_3rd
TPR_TAF2_C
Peptidase_M1
HEAT_2
Motif
Other DBs
NCBI-GeneID:
125858015
NCBI-ProteinID:
XP_049393637
LinkDB
All DBs
Position
3:3172644..3187952
Genome browser
AA seq
1508 aa
AA seq
DB search
MAKARKGKSEEQKGDNSEAVVRHQKLCLSIDMDKRRIYGYTELDVVVPENGILGLHADNL
VIDSVTVDGEPTEFEVFPHYLALENGDRWCSVSSATSAADAAGSVYLSHLDRELLSNLLI
MCKKPAEHDIERQEMHLENGVNSSAENNQNVKKVRIDYWVEKAETGIHFDGDVLHTDSQI
RRARCWFPCMDDNLQCCCYDLEFTVASNLVAVSTGSLLYQIWTKDVPARKTFVYRLSTPV
NARWISLAVAPFEILPDSNITHLSHICLPADLTKLRHTVGFFHSAFSYYEDYLSASFPFG
SYTQVFIPPEIAISSASIGASLSIFSSQFLFDGKVINKTIDTRIKLAYALARQWFGVYIT
PEAPNDDWLLDGLAGFLTDMFIKRFLGNNEARYRRYKANIAVCRADDSGATALSAVAASK
NLYGTQCIGLFGKIRSWKSVAILQMLEKQMGPESFRKILQQIVSRAQDVNRLLRTLSTKE
FRHLANKVGNLERPFLKEFFPRWVGSCGCPVLKMGFSYNKRKNMVELAILRECTARFDSS
DTMSNGKPDSEKQEGDGWPGMMSIRVHELDGMYDHPILPMTGEPWQLLEFQCHSRLAAKR
FQKTKKSSKPDGSDDNGDTVANVDMRATSDSPLLWLRADPELEYLAEIHLNQPVQMWINQ
LEKDRDVVAQVQAIATLEALPHLSFSVVNALNNFLGDSKAFWRNRIEAAFALAGTASEET
DWAGLTHLVAFYKTRRFDANIGLPKPNDFRDFQEYFVLEAIPHAIAMVRAADQKSPREAV
EFILQLLKYNDNSGNPYSDVFWLAALVRSIGELEFGQQSIVYLSSLLKRVDRLLQFDRLM
PSYNGILTISCIRSLTQIALKLSEFVPLDRVIELINPFRTSKTLWKVRVEASRSLLDLEF
QRNGIDAALALFIRYLDEEPTLRGQVKLGVHAMRLCQIRNESDFDSDVKGETLVSLLRLL
ESSISFNNVFLRHYLFCILQVLARRAPTLYGVPKDETLRMGHAAFCSNLKNIFADLVKQS
KPPECPLENLEDILDDSAIADALPGNENAKGATISVPDSLFVSEVQKDTEDALLSSEIIN
TATGAIPDSLVVTELQNETDLLNYRHGVMHPVGDLPLPSSADPCREEPVLPDNEQTKPMV
SLLHETGGMSMGPPTTDNLGCRDQGQPLINLGRDNPGISEPIIEPDTVSASLERKKPVFK
IKVRKTVTSSRAEDNENVTMDKSQDGFRDVDRGASSSVSVDAPQRNVVELLSSGGNQFPE
DVNSCHDVGSHVTASIGSAKVAVEVEELTKELQCTAESSKVSLVPQLDDHLLAGITRVDD
PEAEPHKYASLHSLTMPNLPVHGKVKEKKKDRGKKRKQEGRKDDPEYLERKRLKKEKKRK
EKELTKILKDEAKASTSLESQRKNEQGGTKAETIRNDHKTILVEQESRKDEAEPRQVVNG
AEAKATSSGLSGRNEDIGAKGASMQLKPGGSNGVKLNVDRGDASVNAAPPTSSHKFKIRI
KNRTLGKS
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggctcgcaaagggaagagcgaagaacagaaaggggataattctgaagcagtc
gttcgtcatcagaaactatgtctctcaattgacatggacaagcgtcgaatttacggttac
acagagcttgatgtagttgtaccagaaaatggaattttgggcttgcacgcggataatttg
gtgatagacagtgttacagttgatggggagcctacagaatttgaagtttttccgcactat
ttagcattggaaaatggggatagatggtgctctgtatcatcagctacttcagctgctgat
gcggctggttcagtttacttgtcacatctagatagagaattgctatcaaatttgctgatc
atgtgcaaaaaacccgcggagcatgatattgaaagacaggaaatgcatttagagaatgga
gtgaactcttcagctgaaaacaatcagaatgttaagaaggtccgtattgattattgggta
gagaaagctgaaactggaatccactttgatggtgatgttttacatactgacagccaaatt
cggcgtgcacgatgttggtttccctgcatggatgacaatctacaatgttgttgctatgat
ttggaatttacagtggccagtaatcttgtggctgttagtactggaagcttactttatcag
atctggaccaaggatgttcctgcacgtaaaacttttgtctacagactaagtactcctgtt
aatgctagatggatatccttggcagtcgcaccatttgaaattcttcccgactccaatatt
actcatctctcacatatttgtctacctgctgacttaacaaagctgcggcacactgtagga
ttttttcacagtgcttttagctactatgaggactacctttctgcatcatttccatttggg
tcatacacacaagtttttattcctcctgagatagcaatatcctcagcgagtataggagcc
tccttgagcatcttcagctctcaattcctattcgatgggaaggtcattaataagaccata
gatacaaggattaaacttgcttatgcccttgcaagacaatggtttggagtgtatatcacc
ccagaagcgccaaatgatgattggttgttggatggtcttgctggtttcttgactgatatg
ttcatcaagagattccttggcaataatgaagcacgctataggagatacaaggctaatatt
gctgtttgcagagcagatgatagcggtgcaactgccttaagtgctgttgctgcttcaaag
aatttgtatggcacccagtgcattggtttatttggaaaaataagatcttggaagtctgtt
gcgattctccaaatgttagaaaaacagatgggacctgagtcatttcgcaagattcttcag
caaattgtttccagggctcaagatgtaaatcgattgttgagaacccttagcacaaaagag
ttccggcaccttgccaacaaggttggtaatcttgagcgcccatttcttaaagaattcttt
ccacgttgggtcggatcatgtggctgtccggtgctgaagatgggattctcctataacaaa
agaaagaatatggtcgagttagcaatattgagggaatgcacagctagattcgactcaagt
gatactatgagtaatggtaagcctgattcggaaaagcaagaaggtgatggatggcctggc
atgatgagcatacgggtgcatgagcttgatggcatgtatgaccatccaattctgcctatg
actggagaaccctggcagctgcttgaatttcagtgtcattctagacttgcagcaaaacgg
tttcaaaaaaccaaaaagagttctaaaccggatggttcagatgataatggtgacactgtg
gctaatgtagatatgcgtgcaacctctgattccccattgctgtggctccgggcagatcct
gaattggagtatcttgctgaaattcatttaaatcaaccggtccagatgtggataaatcag
ttggagaaggacagagatgtggtcgctcaggtgcaggctatagcaacattagaagcatta
ccacatctttctttttcagttgttaatgctctcaacaacttccttggtgactctaaggcc
ttttggaggaatcgaatagaggcggcgtttgctttggccggtacagcatcagaggaaact
gattgggctggcttgactcatcttgttgcattttataaaactcgaagatttgatgccaat
attggacttcccaagccaaatgacttccgtgatttccaggagtactttgtacttgaggct
attccacatgctatagctatggttcgagcagctgaccagaaaagccctagggaagctgtt
gaatttattctacaacttctgaagtacaatgacaacagtggaaacccctactctgatgtc
ttttggcttgctgcgttagttcggtccattggtgagcttgaatttggacagcagagcatt
gtgtatttatcatcccttctcaagcgagttgatcggctcttgcaatttgacaggttgatg
ccaagttacaatggtattttgacaattagctgcatccggtctttgacccaaattgcacta
aagctgtcagagtttgttcctcttgatcgtgtcattgagctcattaatccattccgaact
tctaagacactctggaaagttcgggttgaagcaagcagatcacttcttgatcttgaattc
caacgcaatgggattgatgctgcattggcattgtttattagatatttggatgaagagcca
actttaagaggtcaagtgaagttaggtgtgcatgccatgcgtttatgtcagattagaaat
gaatctgattttgacagtgatgtgaagggtgaaactcttgtttctttattgcgcctgctg
gagagctcaatctcgtttaacaatgtttttcttcgtcattacttgttctgcatcttacaa
gtccttgctcgaagagcgccgacactgtatggagtgccaaaagatgaaactttgaggatg
gggcatgctgcattttgcagcaatcttaagaatattttcgctgatcttgtcaaacaatct
aaacctcctgaatgtcctctggagaaccttgaagatatacttgatgattcagccattgca
gatgctcttccgggcaatgaaaatgcaaaaggtgctactatctcagtacctgatagttta
tttgtatcagaggtccagaaagacacggaggatgctctattgagtagtgaaattataaac
actgctactggtgctatacctgatagtttggttgttacagagctccagaatgagacagat
ttgctgaattataggcatggagtaatgcatccggtgggtgacctcccactgcctagctct
gcggatccttgtagagaagaacctgtcttacctgacaatgagcaaacaaagccaatggtg
agcctgttgcatgagactggaggtatgtccatgggccccccaacaaccgataaccttgga
tgccgtgatcaagggcaaccattaatcaatcttggacgagataatccaggaatttctgaa
cctatcatagaacctgatactgtttctgcaagtcttgaaagaaagaagcctgttttcaag
attaaagtgagaaaaactgtcacatcttctcgagctgaggataatgaaaatgtaacgatg
gacaaatctcaagatggttttcgtgatgttgaccgtggggcaagtagctctgtttctgtt
gatgcacctcaaagaaatgttgttgaattattgagcagtggtggaaaccagttccctgag
gatgttaactcttgtcatgatgttggatctcatgttactgccagcattggaagtgccaaa
gttgcagttgaagttgaagagctaacaaaggagttgcaatgcactgctgagtcgagcaaa
gtttctttggtgccacaacttgatgatcacttattagcgggtatcacgagagttgatgac
cctgaggctgaaccacataaatatgcaagtttgcattcgctgactatgcctaaccttcca
gttcacggcaaagtgaaggaaaagaagaaagacagaggaaagaaacgaaagcaggagggg
cgcaaagatgacccagagtacttggagcggaaaaggttaaagaaggagaagaaaaggaag
gagaaggagttaacaaagattttgaaagacgaggcaaaggcttcaacgtccttggagagt
cagaggaagaatgagcagggaggcaccaaagcagagacaatcaggaatgatcataagaca
attttagtagagcaagaaagtagaaaagatgaagctgaacccagacaagtggtgaatggt
gcagaagcaaaggcaacctcttcgggcttgtctggtagaaacgaggatatcggggctaaa
ggagcaagcatgcaattgaaacctgggggatctaatggggtgaagttaaacgtagataga
ggcgatgcgagtgtaaatgctgcgccacctacttcttcacataagttcaaaatcaggatt
aaaaaccgaacgcttggtaaatcatga
DBGET
integrated database retrieval system
