Solanum stenotomum: 125858248
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Entry
125858248 CDS
T08385
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
125858248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125858248
Enzymes [BR:
sstn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
125858248
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
125858248
DNA repair and recombination proteins [BR:
sstn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
125858248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Fpg-like_C
Peptidase_U32_C
Motif
Other DBs
NCBI-GeneID:
125858248
NCBI-ProteinID:
XP_049393919
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All DBs
Position
3:complement(5197341..5203789)
Genome browser
AA seq
446 aa
AA seq
DB search
MPELPEVEAARRAIEDNCIGKKIVKAIIADDPKVIDGVSPVDFKASLEGKTIVAANRKGK
NMWIELDSPPFPTFQFGMAGAIYIKGVAVTKYKRSAVKDDDEWPSKYSKVFLELDDGLEL
SFTDKRRFARVRSLEDPVSVPPISELGPDALLEPMTVDEFYKALSKKKIGIKALLLDQSF
ISGIGNWIADEVLYQARIHPMQSASSISKEDCATLLKCINEVIKKAVEVGADSSQYPTNW
IFHSREKKPGKAFVDGKKIEFITAGGRTSAFVPELQKNTGAESAKAAGKRQQVKVQKIKH
NDSDSQDEEPEIEETAAGKSKVKQRGTNTKRASTNKKSKESNSDDENDSDESPKKSGKAK
QNKSSKGKGGDQKKKTRGTNTAAKRKLEESDDEDDTDDNDASGDDDDSEQDKDQKLSSKT
QSKGKMTTKQMAEPRQTRNKPSKKQK
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgccagagcttccagaggtagaggcagctcgaagagccatcgaggacaactgcattggc
aagaaaattgtgaaagctatcatcgccgacgatcccaaggtcatcgacggcgtgtctcct
gtggatttcaaggcatctcttgagggaaaaactatcgtagctgcaaatcgcaaagggaaa
aacatgtggattgagctcgattcccctccttttcctactttccagttcggaatggcgggt
gctatatatatcaagggagttgcagttacaaaatataaacggtctgcggtaaaagatgat
gatgagtggccttccaagtattcaaaggttttccttgagttggatgatggtctggagctt
tcatttacggataagaggcggtttgccagggttcgctcattggaggatccggtttctgtt
cctccaatatctgagcttggtcctgatgcgctgttggagccgatgactgtagacgagttc
tataaagctttgagtaagaagaagattggcattaaggctttactacttgaccagagtttt
atttcaggaattggcaactggattgcagatgaagtgttatatcaggcaagaatccatcct
atgcagtctgcttcaagcatatccaaagaggactgtgcaacattgctgaagtgcatcaac
gaggtcatcaaaaaagctgtggaagttggggcagatagtagtcagtatcctactaattgg
attttccattcccgggaaaagaaacctggcaaagcctttgttgatgggaagaaaatagaa
ttcatcacggcaggtggcaggacatcagcctttgttccagagctacaaaagaatacgggg
gctgaatctgcaaaagcggcaggtaaacggcaacaggtcaaagttcagaaaatcaagcat
aacgatagtgatagtcaagatgaagagccagaaattgaagagacagcagcggggaagtca
aaggtgaagcagcgtgggacaaatactaagagagcttctactaacaagaagtcaaaggaa
agcaacagtgacgatgaaaatgatagtgatgaatctccaaagaaatctggaaaagcaaaa
caaaacaaaagctccaagggaaaaggtggtgatcaaaagaagaaaactagaggaacaaat
acggctgcaaaaagaaaactagaggaaagtgatgatgaggatgacaccgacgataatgat
gctagtggggatgatgatgatagtgaacaggacaaggatcaaaagctttctagtaaaaca
caatcaaaggggaagatgaccaccaagcaaatggctgaaccaaggcagactaggaacaag
ccgtccaagaagcagaaataa
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