Solanum stenotomum: 125858403
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Entry
125858403 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125858403 isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125858403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125858403
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125858403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
Zn_ribbon_RanBP
MMR_HSR1
GTP_EFTU_D4
TAPR1-like
Motif
Other DBs
NCBI-GeneID:
125858403
NCBI-ProteinID:
XP_049394122
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Position
3:complement(3682783..3692917)
Genome browser
AA seq
733 aa
AA seq
DB search
MPRKVNYGVKYKEDFDDYEDYGYEYDDGYDCAEENGVPPETRSKQESVKSGVWHCPICTF
DNEDTMNACDICGVLRNPLVKKCVSSKESADGSCAVGGICKDCGASVMAESLFPSLLLQK
AKNVINFEAQNYSFKTEDCFNFYKPGNICGQFHDLHRTFCSQSHCKIDIVPFKFDSPSPD
DLVLSGIAPSKLRPKAADTDKIIQLDIPSNNKELSTEVKKELAAEGHPSSSTSLAKVKHY
DLKDSGSALKTRGNNGLTSNLNDISMSSKPHSVDTGKSDSAASSSKNKPQKIVQPPQTED
NFNQLNLAIVGHVDSGKSTLSGRLLHLLGRISHKEMHKYEKEAKQQGKGSFAYAWALDES
AEERERGITMTVGVAYFNTKCYRVVLLDSPGHRDFVPNMISGATQADAAILVIDASVGAF
EAGIDATGGQTREHAQLIKSFGVDQIIIAVNKMDAVGYSKERFDAIKKQLGTFLRACKFK
DSSVAWIPLSAMENQNLVTGPSESRLLSWFRGPCLLDAIDSLQPPQRDYSKPFLLPICDV
VRAQSQGQVTICGKLERGALQTGNKVLVMPFRDVATVRSLERDSQVYNAAKAGDSVTINL
QGIDANHVMAGGVLCHPEFPVPVANHLELKVLILDNGIPILIGSQLEFLVHHAKEAARVV
RILSLLDPKTGKETKKSPRCLLAKQNAMIEVVLQGMVCIDEHSNCKALGRVSLRSSGRTV
ALGLVTRVIGKQE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaggtaaattatggagttaagtacaaggaagattttgatgactatgaagat
tacggttatgaatatgatgatgggtatgattgtgcagaggaaaatggtgtgccgccagaa
acaaggtcaaaacaggagtcggttaagtctggggtttggcattgtcctatttgcacattt
gataatgaagataccatgaatgcatgtgatatatgtggagtccttcgtaatccattggtc
aaaaaatgtgtcagcagtaaagaaagtgcagatggttcctgtgcagttggtggcatatgt
aaagattgtggagcatctgtaatggccgagtctctatttccatcactgctgcttcagaaa
gcaaaaaatgttataaactttgaagcacagaattactcttttaagaccgaagattgcttt
aacttctacaagcctggaaatatatgtggacagtttcatgatttacacagaactttttgc
tctcaaagccattgcaagattgatatagtacctttcaagtttgactccccatctccagac
gatttagtactgagtggaatagcaccatccaaattacgtcccaaagcagctgatactgac
aagatcatacagttagatatcccatcaaataacaaggaactgagtacagaagttaaaaag
gaattggctgctgaagggcatccaagctcttcaacctcattagcaaaagttaaacactat
gatctgaaggatagtggttctgctttgaaaactaggggaaataatggcctaacaagcaat
ttgaacgatatatctatgtcatcaaagcctcacagtgtggatacaggaaagagtgacagt
gcagcatcaagctcaaagaataagcctcagaaaattgtacagcctcctcaaacagaagac
aacttcaaccagctaaatcttgcaattgttggccatgtggattctggaaagtcaacactg
tcaggaaggttgctgcacctattggggcggatatcccataaggaaatgcacaaatatgaa
aaagaggctaagcagcaaggaaaagggtcgtttgcttatgcctgggcattggatgagagt
gctgaagaaagagaaaggggaataactatgacagtgggtgttgcctactttaacacaaag
tgttaccgtgttgttctgcttgattccccaggccacagggactttgtcccaaatatgata
tcaggggctacacaagcagatgcagcaattcttgtaattgatgcttcagtaggtgcattt
gaagcaggtattgatgctactggaggtcagacgagggagcatgcacaacttatcaaaagc
tttggggtggatcagattataattgcagttaacaaaatggatgcagtgggatattccaaa
gaacgatttgatgcaattaagaaacaattaggcacatttctccgtgcttgtaagtttaaa
gattcttcagtagcatggattcccttaagtgccatggaaaaccaaaatttggtgacaggt
ccatcagaatcacggttgttgtcctggtttcgaggtccttgcctattggatgcaatagac
tctctccaacctcctcaaagagactactcgaagccatttttattgcctatatgtgatgtt
gttagagcacagtctcaaggacaagtgacaatatgtggtaagttggagaggggagctctt
caaactggaaataaggttttagttatgccattcagagatgtggcaacagtgcgttctttg
gaacgtgattctcaggtttataacgctgcaaaagctggagacagtgtcactatcaatcta
cagggtattgatgcaaatcacgtgatggcgggaggtgtcttgtgccaccctgaattccct
gttccagttgcaaatcatttggaactgaaggtcctcatcctggacaatggcattccaatt
ttaattggttctcagttggaatttcttgtacaccacgctaaggaagctgcaagagttgtg
aggattttgtcattgcttgatccaaagaccggaaaggagaccaaaaaatcacctcgatgt
cttctggcaaagcagaatgctatgattgaggtggttttgcaaggaatggtttgcattgac
gagcattctaactgtaaagctcttggaagggtgtctctccgatcatcaggaagaactgtc
gctcttggtctggtgacccgagttatagggaagcaggagtaa
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