KEGG   Solanum stenotomum: 125858516
Entry
125858516         CDS       T08385                                 
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
sstn  Solanum stenotomum
Pathway
sstn03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sstn00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    125858516
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sstn04121]
    125858516
   03036 Chromosome and associated proteins [BR:sstn03036]
    125858516
Ubiquitin system [BR:sstn04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     125858516
Chromosome and associated proteins [BR:sstn03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     125858516
SSDB
Motif
Pfam: WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40_Gbeta Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_Aladin WDR55 Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR41 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N MIOS_WD40 Beta-prop_WDR90_POC16_2nd WD40_RFWD3 Beta-prop_Vps41
Other DBs
NCBI-GeneID: 125858516
NCBI-ProteinID: XP_049394272
LinkDB
Position
3:16146014..16147148
AA seq 343 aa
MEKKSGKKFHPRSGNSVTYDSSYPIYAMAFSSFTSSLPNRHPRIAIGSFIEEINNCVDIL
SFDAHNLTLKPIPNLCFEHPYPPTKLMFHPNPFDSLKSNDILASCSDYLRLWEVGDTSIE
PLFTLSKNKTSEYVAPLTSFDWNEVEPRRIGTSSIDTTCTIWDVEIGAVESQIIAHDKEV
YDIAWAEAAVFASVSADGSVRIFDLRHKEHTTIIYESPEPGTQLLRLAWNKHDLRYLATM
SMDCNKIMILDIRSLARPVAELARHQASVNAIAWAPQSRRHICSAGDDGQALIWELPTVV
GPNGIDHMARYSAGAEINQIQWSAAHHDWIAIAFSNKLQLLKV
NT seq 1032 nt   +upstreamnt  +downstreamnt
atggaaaaaaaatctggtaaaaaatttcatccccgatctggaaattccgttacatatgac
tcatcctaccccatctacgccatggctttttcctccttcacttcttccctccccaatcgc
caccctcgaattgccattgggagctttatcgaagagatcaacaattgtgttgatattctc
tctttcgatgcacataacctaacccttaagcctattccgaatctctgtttcgaacaccct
tatccacctacgaagctcatgttccatcctaatccttttgattctctcaaatcgaatgac
attcttgcctcctgcagtgactacctccgtctttgggaagttggtgatacttctattgaa
ccccttttcactctcagtaagaataaaactagtgaatacgttgcccctttgacgtctttt
gattggaatgaggtggagcccagaagaattggtacttccagtatagacactacttgtacc
atctgggatgttgaaataggggctgtcgaatctcaaattatagcccatgataaagaagtt
tacgatatagcttgggctgaagctgcggtttttgcctccgtttctgctgatgggtcagtt
aggatttttgatttgaggcataaggaacatactacaattatttatgagagtccagaaccg
ggtactcagttgttgaggttggcttggaacaagcatgacttaagatatctggctactatg
tcgatggattgcaacaagattatgattttagatattagatctctagcaaggcctgtggca
gagttggctaggcatcaggcgagtgttaatgctattgcttgggctccacagagtcgtcga
catatttgttcggctggggatgacgggcaggcgctcatttgggagttgccaactgttgta
gggcctaatgggattgatcatatggcaaggtactctgctggagctgagattaatcaaatt
cagtggtctgctgcgcatcatgattggattgccattgcgttttctaacaagttgcaactg
cttaaagtataa

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