Solanum stenotomum: 125858541
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Entry
125858541 CDS
T08385
Name
(RefSeq) vacuolar protein sorting-associated protein 35A-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
sstn
Solanum stenotomum
Pathway
sstn04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125858541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sstn04131
]
125858541
Membrane trafficking [BR:
sstn04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
125858541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
TraH
Motif
Other DBs
NCBI-GeneID:
125858541
NCBI-ProteinID:
XP_049394302
LinkDB
All DBs
Position
3:complement(62496764..62506575)
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AA seq
790 aa
AA seq
DB search
MTPNGVEDEEKFLASGIAGIQQNAFHMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKY
YELYMRAFDELRKLEMFFKEETKRGCSIVELYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDILKDLVEMCRGIQHPLRGLFLRSYLSQVSKDKLPDIGSEYEGDADTIVDAVEFVL
QNFTEMNKLWVRMQHQGPAQEKKKREKERSELRDLVGKNLHVLGQIEGIDLEMYKETVLP
RILEQVVNCKDEIAQGYLMDCIIQVFPDEYHLQTLETLLGACPQLQPSVDIKMVLARLME
RLSNYAALSIDVLPEFFQVEAFAKLNSAIGKVIEAQEDMPIAGVVTLYSSLLTFTLHVHP
DRLDYVDQILGACVKKLSGKGKLKDSIATKQIVALLSAPLEKYKDIDTALKLSNYPHVME
HLDDATSKEMANVLVQTILKNKTCISTDEKVEALFELMKGLIRDLDENLHDEFDEEDFKE
EQNSVSRLIQMLHNDDPEEMLKIICTVKKHIVTGGPKRLPFTVPPLIFNSLKLVRRLQNQ
DENAPEEETSAIPKKIFQILNQIIEALSSVPVPELALRLYLECAEAANDSDLEPVAYEFF
TQAYILYEEEISDSKAQVTAIQLIIGTLQRMHIFGVENRDTLTHKATGYSAKLLKKPDQC
KAVYSCSHLFWVDDQDSIKDGERVLLCLKRALRIANAAQQMSNATRGSSGSVLLFIEILN
KYLYFYEKGVTQITVASIQSLIELITTEMQSENKTADPAADALLASTLRYIQFQKDKGGA
VGEKYESIKS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgacccctaacggagttgaagatgaagagaaatttctagcttctggaatcgccggcatt
caacagaacgcctttcacatgcatcgcgctcttgactcaaataatctgaaagatgcactc
aaatattcagctcagatgctgtcggagctccgaacttcaaggctatcacctcacaaatac
tacgagctatatatgcgggcttttgatgaattgagaaagctagaaatgttcttcaaggag
gagacaaagcggggttgctcaattgttgagttgtatgaactcgtgcagcacgctggcaac
attttgcctagactgtatctactttgcacagtggggtctgtgtacatcaaatccaaggag
gctcccgccaaggatatccttaaagacctggttgaaatgtgccgtggtatacaacatcct
ttacgtggactctttctgaggagttacctttcccaagttagcaaggataaattgcctgat
ataggttctgagtatgaaggagatgcggatactattgtggatgctgtagagtttgtactc
caaaatttcacggaaatgaacaaactctgggttagaatgcaacatcagggacctgctcag
gaaaagaagaaacgcgaaaaagaaaggagcgagcttcgtgatctcgtcgggaagaatctg
catgttctcggtcaaattgagggtattgaccttgagatgtacaaagagacggtgcttcca
agaattttagagcaggttgtcaactgtaaagatgagattgctcagggctatttgatggat
tgcataattcaagtcttccctgatgaatatcacttacaaactcttgaaaccttattgggt
gcttgtccccagcttcagccatctgttgatatcaaaatggtgcttgctcggctgatggaa
aggctctcgaactatgctgctttaagtatagatgttttacctgagttttttcaagtggaa
gcttttgcgaaactaaatagtgccatagggaaggtgattgaagcccaagaagacatgcct
atagctggagttgtgactttatattcatctcttttaacttttactcttcatgtccaccct
gatcgtcttgattatgtggatcagattttgggtgcatgtgttaagaagctttctggtaaa
ggaaagctcaaagacagtatagcaacaaaacagattgtggcccttctaagtgctccactg
gagaagtataaggatattgatactgcattaaagctttcaaattatcctcatgttatggag
caccttgatgatgcaactagcaaagagatggctaatgttttagttcaaactattctgaaa
aacaaaacttgcatctcaacagatgaaaaggttgaggctctttttgaattaatgaaagga
cttatcagagatttggatgagaatcttcatgatgagtttgatgaagaagatttcaaggaa
gagcagaactctgtttcacggcttattcaaatgcttcacaatgacgaccctgaggagatg
ctgaagataatttgcactgtgaagaagcatattgtgacaggaggaccaaagaggcttccc
tttacagttcctcccctcatttttaattctcttaagttggtaaggcgactgcaaaaccaa
gatgaaaatgctccagaggaagaaacatctgctatacctaagaaaatttttcagatttta
aatcagataattgaggctctctcaagtgttccagtacctgaactagcactaaggttgtac
ctagagtgtgctgaggctgccaatgactctgacctagagcctgttgcctacgaattcttc
acccaagcttatatactatacgaagaagaaatttcggactctaaagcacaggtgaccgca
atacaattaataataggtactcttcagagaatgcacatctttggtgttgagaacagggac
acgctaacgcacaaggctacagggtactccgcaaaactcctgaagaagcctgatcagtgc
aaagctgtctactcttgttcacatcttttctgggttgatgaccaggacagcatcaaggat
ggagagagggttttgctttgtttaaaacgagccttaaggattgcaaatgctgctcaacaa
atgtcgaatgcaacccgaggcagcagtggatctgtcttgctctttatagaaattctaaac
aagtatttatatttctatgagaagggggtcacacagatcactgttgcatccatccagagc
ttaatcgagctaataacaactgaaatgcaaagtgaaaataaaaccgctgatcctgctgca
gacgctttgctcgcaagcacattgcgctatatccagttccagaaggataaaggtggtgca
gttggtgagaaatatgaatccataaagtcttaa
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