Solanum stenotomum: 125858957
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Entry
125858957 CDS
T08385
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125858957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125858957
03041 Spliceosome [BR:
sstn03041
]
125858957
03032 DNA replication proteins [BR:
sstn03032
]
125858957
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
125858957
Spliceosome [BR:
sstn03041
]
Complex A
U1 snRNP components
Sm proteins
125858957
U2 snRNP components
125858957
Complex B
U1 snRNP components
125858957
U4/U6.U5 tri-snRNP components
125858957
Complex C
U2 snRNP components
125858957
DNA replication proteins [BR:
sstn03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
125858957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
125858957
NCBI-ProteinID:
XP_049394670
LinkDB
All DBs
Position
3:62223281..62226946
Genome browser
AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEATGHIVTVEMKSGELYRGSMVECEDNWNCQLESITYTAKDGRVSQL
EHVFIRGSKVRFMIIPDMLKNAPMFKRLESRIKGKGTSLGVGRGRAMAMRAKAQAAGRGA
APGRGVVPPVRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtagcttggggattccggtgaagcttctacacgaagcaacagggcacatagta
accgtggaaatgaagagcggtgagctttacagaggaagtatggtggagtgcgaagataac
tggaattgtcagctcgaaagcatcacttacactgccaaagatggaagggtgtcacaactg
gaacacgtttttattcgaggcagcaaagtcaggttcatgataattcccgatatgcttaag
aatgctcccatgttcaagcggctagaatccagaatcaagggaaaaggtacatcactcggt
gttggacggggacgtgcaatggccatgcgagctaaagctcaggctgcaggtcgtggagca
gcacctggtcgaggtgttgtgcctcctgtaagaagataa
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integrated database retrieval system
