Solanum stenotomum: 125859502
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Entry
125859502 CDS
T08385
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125859502
03041 Spliceosome [BR:
sstn03041
]
125859502
03036 Chromosome and associated proteins [BR:
sstn03036
]
125859502
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125859502
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125859502
mRNA cycle factors
Common to processing body (P body) and stress granule
125859502
Spliceosome [BR:
sstn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125859502
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125859502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
125859502
NCBI-ProteinID:
XP_049395229
LinkDB
All DBs
Position
3:33210956..33220383
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AA seq
618 aa
AA seq
DB search
MRNSWADSVENVATDNGGPSGGSGASASTRRSSYVPPHLRNKPMTAEPLAPSHGGPPSGN
DRSGFNGPTSGPRWGGSRPDYGRQGGYGGGGRGGGWGGRGGGWGREREVNPFGNDADVDL
EQSFDQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEAVNLNIRRCKYVKPTPVQ
RYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGNFPQRPHGSRTVYPLALILSPT
RELSMQIHEEAKKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAK
VSLQMIRYLALDEADRMLDMGFEPQIRRIVEQMDMPPPGERQTMLFSATFPKEIQRLASD
FLANYIFLAVGRVGSSTDLIVQRVEFVHDVDKRSHLMDLLHAQMANGVHGKHNLTLVFVE
TKKGADALEHWLCINGFPATAIHGDRTQQEREQALRTFKRGDTPILVATDVAARGLDIPH
VSHVINFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDGNLSMAKPLADLMQEANQDVPE
WLTRYASRSSFGGGRNRRAGGGRFGGRDFRRDSSYNRSGGGGGGGGGGGMNYYDGGNSSG
GYGNYSGGYGPGVTSAWD
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgaggaactcatgggcagattctgttgagaatgtagctactgataatggtgggcctagt
ggtgggagtggagcttctgcttctacaaggagatcatcttatgtcccaccacatcttcgc
aacaaaccaatgacagcagaacctctagctccatcgcacggtggcccaccttctggtaat
gaccgctcagggtttaatggaccaaccagtgggcctcgatggggtggttctaggccagat
tacggacgccaaggggggtatggtggcggtggcagaggaggtggttggggtggcagagga
ggtggttggggtagagagcgggaagttaacccgtttggtaatgatgcagatgtggacttg
gagcaatcgtttgatcaggagaatactggtataaattttgatgcttatgaggatattcca
gtggaaacaagtggagaaaatgtgccacctcctgttaatacatttgcagagatagattta
ggggaggccgttaacttgaatattaggaggtgcaaatatgtgaagccgactcctgtccag
cgatatgcaattcctatctccttagcaggacgagatctcatggcctgtgcccagactgga
tctggcaagacagctgccttttgtttcccaattattagtggaatcatgagggggaatttt
ccgcaacggcctcatgggtcgcggacagtttatccccttgctcttattctctcaccaaca
agagagctctcaatgcagatacacgaggaagctaaaaaattctcttatcagactggtgtt
agagtggtagtggcctatggtggagccccgattaatcaacagctccgagagcttgagaga
ggagttgatattcttgtggcaactcctggaagactggtcgatttacttgagagagcaaaa
gtttcattacagatgattagatatttagctctcgatgaggcagatcgtatgctggacatg
gggttcgaacctcaaatcagaaggatagtggagcaaatggatatgcctccacctggtgaa
agacagactatgctgttcagtgccacattcccaaaagagattcagagactggcatctgat
tttcttgcaaactacatatttttggcagttggacgggttggttctagtactgatttgatt
gttcagcgagttgagtttgttcatgatgttgacaagagaagccatcttatggatctactt
catgcacagatggctaatggggttcatggcaagcataatctaactttggtatttgtcgaa
acaaagaagggtgctgatgcattggagcattggctgtgtattaatggatttcctgcaact
gccattcatggtgataggactcagcaggaaagggagcaagcgttgagaacattcaagaga
ggagataccccaattttagttgcgacggatgtggctgctcgaggccttgatatccctcat
gtttctcatgttataaactttgaccttcctaatgacattgatgattatgtgcaccgtata
ggcaggacaggtcgtgcaggcaagacaggattagcaactgctttctttaatgatggtaac
ctttccatggccaaaccgctagctgacttgatgcaagaagctaatcaggatgtacctgaa
tggttgactcgttatgctagccgttcatcattcggaggaggcagaaacaggcgagctggc
ggagggcgatttggtgggcgtgacttcaggagggattcgtcatacaatagaagtggaggc
ggaggtggaggcggaggaggaggtggtatgaattactatgatggaggtaatagtagtggt
ggttatggcaattatagtgggggatatggtcctggagtaactagtgcttgggactag
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