KEGG   Solanum stenotomum: 125859827
Entry
125859827         CDS       T08385                                 
Name
(RefSeq) uncharacterized protein LOC125859827
  KO
K12857  Prp8 binding protein
Organism
sstn  Solanum stenotomum
Pathway
sstn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sstn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125859827
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sstn03041]
    125859827
Spliceosome [BR:sstn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    125859827
 Complex C
   U5 SnRNP specific factors
    125859827
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_EIPR1 NBCH_WD40 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_SCAP Beta-prop_WDR35_TULP_N eIF2A Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_Nup120_160 RMC1_N Nbas_N WD40_like
Other DBs
NCBI-GeneID: 125859827
NCBI-ProteinID: XP_049395618
LinkDB
Position
3:complement(39634481..39639900)
AA seq 340 aa
MQTESALSVMGPRPMELSAVLPSGPQGLGPNGKPRTSSLESPIMLLSGHQSAVYTMKFNP
AGTIIASGSHDKEIFLWNVHGDCKNFMVLKGHKNAVLDVQWTTDGSTIVSASPDKTVRAW
DVETGKQIKKMAEHSSFVNSCCPARRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKFQI
TAVSFSDASDKICTGGIDNDVKLWDLRRCEVTMTLQGHQDTITGMQLSPDGSYLLTNAMD
CTLRIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCSWSPDGSKVTGGSSDRMVYVWDTTS
RRILYKLPGHTGCVNECVFHPNEPIVGSCSSDKQMYLGEI
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgcaaactgaaagtgctttgtcagttatggggccaaggccaatggagttgtctgctgtg
cttcctagcggtccccaaggacttggaccaaatggaaaaccacggacatcaagcttggag
tcaccaattatgttgctatctggacatcaaagtgcagtatatactatgaagttcaatcca
gcaggaacaatcattgcatctggttcacatgacaaagaaatctttctttggaatgtacat
ggtgattgcaagaattttatggtcttgaaagggcacaaaaatgcagttcttgatgttcaa
tggactactgatggatcaacaatagtatcagctagccccgataagactgttagggcatgg
gatgtagaaacagggaaacaaataaagaaaatggctgaacattcctcatttgttaactca
tgctgcccagctcgtaggggccctcctcttattgtcagcggatctgatgatggcactgct
aaactttgggatatgcgccaaagaggagccatacaaacatttccagacaaatttcaaatt
actgccgtcagtttctctgatgcctccgataaaatctgcacaggtggtattgacaatgat
gtgaaattgtgggatttacgaaggtgtgaagtaactatgactcttcaaggccatcaagat
actataactggtatgcagctgagtcctgatgggtcttatcttcttactaatgccatggat
tgcacactccgcatatgggacatgcgcccttatgcgccccaaaatcgatgtgttaagatc
ttggaaggccaccaacacaattttgaaaagaacttgctgaaatgtagttggtcgcctgat
ggaagtaaggtaacaggtgggagttctgatcgcatggtttatgtttgggacacaacatct
aggcggatcctgtataagctccctggacacactggatgtgttaatgaatgtgtttttcat
cctaatgaaccaattgttggatcttgcagtagtgacaaacagatgtatcttggtgagatt
tga

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