Solanum stenotomum: 125859869
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Entry
125859869 CDS
T08385
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
sstn
Solanum stenotomum
Pathway
sstn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125859869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125859869
03036 Chromosome and associated proteins [BR:
sstn03036
]
125859869
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125859869
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125859869
PBAF complex
125859869
GBAF(ncBAF) complex
125859869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SPP1_portal
Motif
Other DBs
NCBI-GeneID:
125859869
NCBI-ProteinID:
XP_049395669
LinkDB
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Position
3:complement(11650905..11654518)
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AA seq
526 aa
AA seq
DB search
MNNNNPVKNVSLGTSVPMQIPQSMPINHNQPAARHLSQSPAQRGPHFPGHFQLSESRSHA
PFQGQAQAFSHFITSGVNTNAGVSSPAASTPNTASGGARKVLHRPPSRTGGSSNHGQATA
SPLKTMELTPAVRRKKRKVSDRFIPDKVAASLPESALYSQLLEIEGRVDALLSRKKIDML
ESLKSPPRFQKTLRIYVFNTFANQTPANPDSDSAEPASWSLKIIGRILGGGPGPLASEKE
QKFGVACPKFSSFFKKVTVYLDQSLYPDNHVILWDSSRSPALHEGFEIKRKGDKELTAII
RLEMNYMPEKFKLSPALQEVLGIEVETRARVLAALWYYIKTKKLQISHDTSSFTCDPSLR
KIFGDEKLKFSLVPQKINPHLTAPQPIHLEHRIKLSGSNPAGNTCYDVLVDVPFTLQKEL
STFLSDLEKNKDIDAYDETISTAIKKIHEHQRRRAFFLGFSQSPTDFVNALVASQARDLK
LVSDDSTRDSEMERRSEFYNQTWTEDAVVRYLNRNHASGADHSARK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaataatccagtcaagaatgttagtttaggaacctcagttccaatgcaaatt
cctcaatctatgccgataaaccataatcaaccagctgctcgtcacttgtcccagtcacca
gcacaacgtggtccacatttccctggccattttcagttatctgaatcacgatctcatgcc
ccatttcaaggtcaagctcaggcctttagccatttcatcacttcaggggttaataccaat
gctggtgtctcatcccctgctgcttctacacccaatacagcttctgggggtgctagaaag
gtgctccatagaccaccttctcggactggtggttcatctaaccatggtcaagcaactgct
tctcctttaaagacaatggaattaacccctgctgtgcgtaggaaaaagcgaaaagtttct
gacaggtttatacccgataaggtggctgcgagtttgcccgagtcagcactttactctcag
ttgcttgaaattgagggtcgtgtagatgctcttctttctagaaagaagattgacatgttg
gaatcccttaagagtcctccgcgtttccagaaaactctcagaatttatgtattcaatact
ttcgctaatcagacaccagctaatccggacagcgattctgctgagccagcttcatggtct
cttaagattattggaaggatcttgggaggtgggccgggtcctctagcatctgaaaaggag
cagaaatttggtgtagcttgccccaagttttcatctttcttcaagaaagttactgtttac
ttggatcagagtctatatcctgataaccatgtaattttatgggatagttctcgatcacca
gcccttcatgagggttttgagattaagagaaaaggggataaggagcttactgcaatcatc
agactggagatgaattatatgcctgagaaatttaaactatcgccagctttgcaggaagtt
cttggtattgaggttgagacacgagctagagttttagctgctctgtggtactacataaaa
actaagaagctacagatatcccatgacacctcctcattcacttgtgatccttctctaagg
aagatttttggagatgaaaagttgaaattttccctggttccccaaaagattaatccgcat
ctgactgcccctcaacctattcacctggagcacaggattaagctttctggaagtaaccca
gctgggaacacttgttatgatgtactggttgatgttcccttcacattgcagaaggaattg
tccacattcttatctgatttagagaagaacaaggatattgatgcatatgatgaaactatt
tccaccgctataaagaaaatccatgaacatcagagaaggcgagctttcttcctgggattt
agtcagtcacctaccgattttgttaatgcattagttgcatctcaagctagggatcttaag
cttgtttctgatgattcgacccgtgattcagaaatggagagacgttctgaattctacaat
cagacttggactgaagacgccgtcgtccgctacttgaaccgcaatcatgcttctggtgct
gaccattctgcaagaaaatag
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