Solanum stenotomum: 125859931
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Entry
125859931 CDS
T08385
Name
(RefSeq) RNA polymerase sigma factor sigA-like
KO
K03086
RNA polymerase primary sigma factor
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125859931
Transcription machinery [BR:
sstn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
125859931
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
125859931
NCBI-ProteinID:
XP_049395745
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All DBs
Position
3:15229796..15235546
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AA seq
509 aa
AA seq
DB search
MMATTAVIGLSAGKRLLSSSFYYSDLNEKLSCNSDHSLPCHQVPSVKNVITAKKSSDYSP
SYVSSRKLQSVKALKEHVDIASDPSDVQSWFERFEQLQNESDDEDDDSLEAFLLLQKSML
EKQWNLSAEETLTASPQHEKNCKKMHITCSGTSARRRRMDSRQRVLGPKSSATPISATKP
LRSIIGPELLQNRLKGYVKGVVSEELLTHTDVLQLSKKIQVGLHVEEQKSRLKERLGCEP
SDDQLALSLKMSRIDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLIQGGL
IGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNAKMR
LEEKGITPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGATLHSYIADN
HLENNPWHGVDIWALKDEVNNLISSSLREREREIIRLYYGLDSECLTWEDISKRIGLSRE
RVRQVGLVALEKLKHAARKRRLDAMLIKQ
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgatggccacaacagcagttattggactgagtgcaggaaaaagactcttgagttcttcc
ttctattattctgatcttaatgaaaagctatcttgtaacagtgatcatagtttgccctgc
catcaggttccttctgttaaaaatgtgatcaccgcgaagaagtcatccgattatagcccc
agttatgtatccagtcgaaaactacaatctgtcaaggctcttaaagagcatgtagacatt
gcatccgacccttctgatgtgcagtcctggtttgaaaggttcgaacaattgcaaaatgaa
agtgatgacgaggatgatgattcattggaggctttcctcttgctgcagaagtccatgctt
gaaaagcagtggaatctttctgctgaagagacattgactgcttctccacaacatgaaaag
aattgtaagaagatgcatattacttgctcagggacgtctgctaggcggaggagaatggat
tctcgacaaagagttcttggtccaaaaagttcagctacacctatcagtgcaaccaagccg
ctgagatcaataattggtccagagctacttcaaaatcgtttaaaaggttatgttaagggt
gtagtaagtgaagagctgctcacacacactgacgtgcttcaactatccaaaaagattcaa
gttggtcttcatgtggaagagcaaaaatcaaggctgaaggaaagactgggatgcgaacct
tctgatgatcaacttgctctttccttgaaaatgtcccgtattgatttacaatctacattg
atcgagtgttccttggcaagagaaaggctttcaatgagcaatgttcgtcttgtcatgtca
atcgctcaaagatatgataacatgggtgctgaaatggctgatctcattcagggaggcctt
attggactacttcgtgggatagagaaattcgatccctctaaaggatacaaaatctcaact
tatgtttattggtggattcgccagggtgtctccagaaccctggttgaaaattcaagaacc
ttaagattgccaacacatctgcatgaaagactcggtctaatccgtaatgcaaagatgagg
cttgaagagaagggaataactccatctgtaaataatatagctgcatcgctaaatatgtcc
cagaagaaagtcaggaatgcaactgaggcaagcagcaaggtgtattcacttgacagggaa
gtgtttccctctttaaatggtcttcccggagcaactctccatagttacattgctgataac
cacctggagaacaacccatggcacggtgttgatatatgggcactcaaggatgaagtaaac
aacctcatttcatcatctcttagggaacgggagagagagattatccgactgtactatggt
ctggacagtgaatgtctcacgtgggaggatattagtaaaaggataggcttgtccagagag
agggtcaggcaggtgggattagttgcacttgagaaactaaaacatgctgcaaggaaaagg
cggctagacgcaatgttgatcaaacagtaa
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