Solanum stenotomum: 125860268
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Entry
125860268 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125860268
KO
K14315
nucleoporin NDC1
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125860268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125860268
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125860268
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
125860268
NCBI-ProteinID:
XP_049396155
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All DBs
Position
3:complement(13627245..13631258)
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AA seq
558 aa
AA seq
DB search
MLISIVERSLFRDKDGGTKVVKHRFLGFLIWQALQSTAVFFLSKTLLLSLFTRTPFKPSF
LSIFAFIVFHFSLLIFSTSLFIISSPRPQRAASPFELLLGTARLILVPISNSQPLLSPDF
RLRARASISFVLFVAVSAVSASLSVITLCLSCNAFDQLKQRRLVIGKLGFWGLQIGLLYG
VHYVYNKRWVLQFPIIQRPPFFSFKMGLPLAVGKALKLSAAGYVLSAILAFVLPYEFKGQ
LPVGNFITEQILFYIGSFVVILCWELCHHLHQVLHTKRSVFAPPKGSAAAETNPSEPLLA
ALEESTPKSLLQYLAYLDLCMVCEGNVDPWRRAAFFEESGETYKRVISVCLTPVEQFTRN
VSEVLESSPVDNSLQLSHQLRSPNEQLADSKVYESFDDFQLLAWCARIVASLTVHSHKED
RFGVAQLSGSNAAVISTLLSSLLAVETLMGKKTNLQSSNTLMDPAGIKWATLNPGRRDSA
AGMAGRRKGAPFYAKAYSMADILKTSIYGIISAFYDEMSHSAKAGLLEKDWIISSKPLYG
TRELLSQKLRLFLDFQAS
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcttatatccatagtagaaagatccttatttagagataaagacggcggtactaaagtc
gtcaaacaccgcttcttagggttcttaatctggcaagcacttcaatccaccgccgtcttc
ttcctctccaaaaccctactcctttctctcttcactcgaacccccttcaaaccttcattt
ctcagtatcttcgctttcatagttttccacttctcccttctcatcttctctacttccctt
ttcatcatctcttctcctcgccctcaacgcgctgcttccccttttgagcttctgctcggt
actgctcggctgatacttgttcccatttctaactcccagccgctgctgtcccctgatttt
cggctccgggcgagggcttccattagtttcgtgctgtttgtggcggtgtctgcagtatca
gcgtctttgtctgtgattaccctctgtttgagctgtaatgctttcgatcaattgaagcag
agacggctggttattgggaaattagggttttggggtttgcagatcggattgttatatgga
gtgcattatgtatataacaagcggtgggttttgcagttcccgatcatccagcgtcctccc
tttttcagctttaagatggggctacctttagctgttgggaaagctctaaagctttctgct
gctggttatgtgctttcagctatccttgcatttgttctaccttatgagtttaagggtcaa
cttccagtaggaaacttcatcactgagcagattctcttttatattggaagttttgtggtg
attctctgctgggaattatgtcatcatttacaccaggtgttacacacaaaacggtccgtc
tttgcccctccaaaaggttctgcagctgctgaaacaaatccaagtgaaccgcttctggcc
gcattggaggagagcactccaaaatctcttttgcagtatcttgcataccttgacctttgt
atggtatgtgaaggtaatgttgatccttggcgccgagctgccttctttgaggaaagtggt
gaaacttacaaaagagtcatttctgtgtgcttgacccctgttgaacaattcacaagaaat
gtgagtgaggttttggaaagctctccagttgataactccttgcaactgtctcaccagtta
cgttctccaaatgaacagcttgccgattcaaaggtttatgaatcatttgatgactttcag
ctactagcttggtgtgctcgcattgtggcttcactgaccgtgcattcacacaaggaggac
agatttggtgttgctcaactatcagggagcaatgctgctgttatttcaacattgctatcg
agtttattagctgttgaaactttgatgggcaagaaaaccaacttacagtcgtcaaatact
ttaatggatcctgctggtattaagtgggctacattaaaccctggaaggagagattcagca
gcaggcatggcaggaagaagaaaaggagcccctttttatgcaaaagcatattcgatggct
gatatcctgaagacttccatctatggtattatctctgctttctacgatgagatgtcgcat
agtgccaaggcaggactgcttgagaaagattggatcatcagtagtaagccactgtatgga
actcgtgagctcctttcacagaaattgcgactgttcctggacttccaagctagctag
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