KEGG   Solanum stenotomum: 125860305
Entry
125860305         CDS       T08385                                 
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
sstn  Solanum stenotomum
Pathway
sstn03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sstn00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    125860305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sstn04121]
    125860305
   03036 Chromosome and associated proteins [BR:sstn03036]
    125860305
Ubiquitin system [BR:sstn04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     125860305
Chromosome and associated proteins [BR:sstn03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     125860305
SSDB
Motif
Pfam: WD40_CDC20-Fz Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 WD40_Gbeta Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR41 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd Beta-prop_Aladin ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR35_TULP_N MIOS_WD40 EIF3I Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 125860305
NCBI-ProteinID: XP_049396191
LinkDB
Position
3:complement(15223262..15224705)
AA seq 342 aa
MENSSQESHLRSEKSVTYDSSYPIYAMAFSSFTSSLTNRRRRLAVGSFIEEFNNRVDILS
FDEDTRTLKPVPNLSFEHPYPPTKLMFHPNPSASLKTNDILASSGDYLRLWDVTDTSIEP
LFTLSNNKTSEYCAPLTSFDWNEVEPRRIGTSSIDTTCTIWDVEKGVVETQLIAHDKEVY
DIAWGEAGVFASVSADGSVRIFDLRDKEHSTIIYESPKPDTPLLRLAWNKQDLRYMATIL
MDSNKIVILDIRSPAMPVAELERHQASVNAIAWAPQSCRHICSAGDDGQALIWELPTVAG
PNGIDPMSVYSAGAEINQIQWSAAQRDWIAIAFSNKLQLLKV
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggagaattcaagtcaagaatcgcatctccgatctgaaaaatccgttacatatgactcc
tcttacccgatctacgctatggctttttcatcattcacttcttccctcacaaaccgccgc
cgtcgacttgccgtcggaagctttatcgaagagttcaacaatcgtgttgatattctctct
ttcgatgaagatacccgaacccttaagcctgttccgaatctctctttcgaacacccttat
ccgcctacaaagctcatgtttcatcctaatccttctgcttctctcaagactaatgatatt
cttgcctcttccggtgactacctccgtctctgggatgttactgatacttctattgaacca
cttttcactctcagtaacaataaaactagtgaatactgtgctcctttgacgtcttttgat
tggaatgaagtggagccgagaagaattggtacttctagtatagacactacttgtaccatc
tgggatgttgaaaaaggagttgtggaaacccaattgatagcccatgacaaagaggtttac
gatatagcttggggtgaagctggagtttttgcgtccgtttctgctgatggatcagttagg
atttttgatttgagagataaggaacattcaacgattatttatgagagtccgaaaccggat
actccattgttgaggctggcttggaacaagcaagatttgagatacatggctactatattg
atggatagcaacaagatagtgattttagatattaggtctccagcaatgcctgtggcagaa
ctggaaaggcatcaggcgagtgtgaatgctattgcttgggctccacagagctgtagacat
atttgttctgctggggatgacgggcaggcgctcatttgggagttgccaactgttgcaggg
cctaatgggattgatcctatgtcagtttactctgctggagctgagattaatcaaattcag
tggtctgctgcacaacgtgattggattgccattgcgttttctaacaagttgcagctgctt
aaagtataa

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