Solanum stenotomum: 125860545
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Entry
125860545 CDS
T08385
Name
(RefSeq) transcription initiation factor TFIID subunit 12b
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
sstn
Solanum stenotomum
Pathway
sstn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125860545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125860545
03036 Chromosome and associated proteins [BR:
sstn03036
]
125860545
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125860545
Coactivators
SAGA/TFTC/STAGA complex
125860545
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125860545
STAGA complex
125860545
TFTC complex
125860545
SAGA complex
125860545
SLIK complex
125860545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
Histone
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
125860545
NCBI-ProteinID:
XP_049396485
LinkDB
All DBs
Position
3:complement(1182126..1191487)
Genome browser
AA seq
637 aa
AA seq
DB search
MAEIPSSSPKLTQPSNPIIDTTNQVSAAGAASSATLSNPGITMTSPSNNNSIAQSPSIDL
PQIPLTQSQQQQQQHQIQMQQPQQQQQQQQLTQSQQQQQMQLQQQQNNSSNLNGSNSNLM
SASNFQMQQNLQRSPSMARMSQLQMQQQQQQFGLMRQQSGGLYGQMNFGVGGTSLQQQQQ
QQLQQQQQQLQQQFQQQQQQQQQQNQQQQQIGGQMGSGNLARAALMGQTGHLPMLSGQAA
VAAAAVAQFNLQSQFLNSPRQKAGLMQGNQFHTGNSHGQSLQAMGMMGSLNMSSQLRANG
ALAYAQRVNQSQLRQQQLAQQNPLTTTQKISAQSLPRTSFANSQLPGLTQNGQSAIMQNN
SSQQQWLKPMPAISTPNSPSFRLQQQRQQMLLQHQNSMGLNPQQLSQIVQQQQQIGHPQM
HQQQQQQQQQQQLSHQQQSSPRMAAPAGQKSLSLTGSQPDATGSGTTTPGGSSSQGTEAS
NQLLGKRKIQDLVSQVDAQGKLDPEVEDLLLEIADDFIDSVTTFACNLAKHRKSSTLESK
DVLLHLEKNWHLTIPGFSSEERKHYPENSSSDLHKKRLDVIRTLMETSQTETSTNSSAKE
TVRPGAGESNHMIRPPSSDNMVSQSNASQMLHEMTRF
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaattccgtcatcttcaccaaaattaactcaaccatcgaaccctataatcgat
actacaaaccaagtatccgccgccggagctgcatcgtcggcgacgttgtctaatcccgga
attacgatgacttctccgtctaacaacaattcaatcgcacaatcgccttcaattgacctc
cctcaaatcccgttaacccaatctcagcaacagcagcagcagcatcaaattcagatgcag
cagcctcaacagcagcagcagcagcagcaattgacacaatctcaacaacagcagcaaatg
cagctccagcagcagcagaataattcgagtaatcttaacggcagtaacagcaacttgatg
tccgcctctaattttcagatgcagcaaaacttgcagagatcaccctcaatggcgagaatg
agtcaattgcaaatgcaacagcagcaacaacaatttggtttgatgaggcagcaatcagga
ggactttatggtcaaatgaattttggggttggaggtacttcgctccagcaacagcagcaa
caacaattacaacagcagcaacagcaactgcagcaacaatttcaacaacagcaacagcag
cagcaacaacagaaccaacaacagcagcaaataggtggtcagatgggtagcggaaattta
gctagggcagctttaatgggacagacgggccatctgcccatgttatctggacaagctgct
gttgcagcagcggctgttgcccagttcaatttgcaatctcaatttttgaattcgccacgg
cagaaggcgggtctaatgcaggggaatcaattccatacagggaattcccatggccagtcc
ttacaggcaatggggatgatgggatctctcaacatgagctctcagctaagggcaaacggg
gccctggcatatgcacaaagggtgaatcaaagtcagctgaggcaacagcaattggcccag
caaaatcctctcaccactactcagaaaatatcggctcagagtcttccaaggacgtcattt
gctaactctcagttacctgggttgactcagaatggacagtctgcaattatgcagaacaat
tcatcacagcagcagtggttgaagccaatgcctgcgatttctactcctaattccccttcc
tttcgtcttcaacagcaaaggcagcaaatgcttctacaacaccaaaactcaatgggtttg
aacccacaacaactatcgcaaattgtacaacagcagcaacagattggacaccctcagatg
catcaacagcaacagcagcagcaacaacaacagcagctttcacatcagcagcaatcttcc
ccgaggatggctgctccagctggccaaaaatctttgagtttaactggatcacaaccagat
gctactggatccggaacaactactccggggggaagttcaagtcaggggactgaagcaagc
aatcagcttcttggaaagagaaagatacaggatttggtttcacaggtggatgcgcaggga
aagcttgatcctgaagttgaagatcttcttctagagattgctgatgacttcattgattcg
gttactacatttgcttgcaatttggcgaagcatcggaaatcttcaactttggagtccaag
gatgtactgctacatctagagaaaaactggcacttgactattccaggcttctcaagtgaa
gagaggaaacactatccagaaaattcatcaagtgatctccacaaaaagcgtttggatgtg
atacgtaccttgatggagacctcacaaacagaaacaagtacaaatagtagtgctaaggaa
accgtcagaccaggggcgggtgaatcaaatcacatgatcagacctccaagttcggacaac
atggtttcacagtctaatgcttctcaaatgttgcatgagatgacaaggttttga
DBGET
integrated database retrieval system
