KEGG   Solanum stenotomum: 125860550
Entry
125860550         CDS       T08385                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
sstn  Solanum stenotomum
Pathway
sstn03013  Nucleocytoplasmic transport
sstn04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:sstn00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    125860550
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    125860550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sstn03019]
    125860550
   04131 Membrane trafficking [BR:sstn04131]
    125860550
Messenger RNA biogenesis [BR:sstn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     125860550
Membrane trafficking [BR:sstn04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    125860550
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    125860550
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    125860550
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_EIPR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_HPS5 Beta-prop_EML Beta-prop_WDR41 WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_SCAP
Other DBs
NCBI-GeneID: 125860550
NCBI-ProteinID: XP_049396491
LinkDB
Position
3:2239884..2242816
AA seq 301 aa
MPSQKIESGHTDTVHDVAMDYYGKRLATASSDCTIKITGVSNSSSQLLATISGHQGPVWQ
VAWAHPKFGSLLASCSSDGKVIIWKEGTQNEWSLARVFDDHKASVNAIAWAPHEFGLCLA
CGSSDGNISIFTARSEDVWETSRIDQAHPVGVTSVSWAPSTAPGSLVGSDLLNPVPKLAS
GGCDNTVKVWKLFDGTWKLDCFPVLQMHTDWVRDVAWAPNLGLPKSTIASASEDGRVIIW
TVGKEGDQWVGKVLKDFGAPVWRVSWSLTGNILAVADGNNNVTLWNEAVDGEWQPVTTVD
T
NT seq 906 nt   +upstreamnt  +downstreamnt
atgccttcacagaagattgaaagtgggcatactgacactgtccatgatgtggcaatggat
tattatggtaagcgtctggcaacagcttcttcagactgcaccattaagataacaggggtc
agcaattcgtcttcgcagctactggctactataagtggccaccaaggaccagtgtggcaa
gtagcttgggctcaccctaagtttggttccctccttgcttcttgttcttctgatggaaag
gtaattatctggaaggaaggtactcaaaatgagtggagcttagcacgtgttttcgatgac
cataaagcttcagtcaatgcaatagcttgggctcctcatgaatttggcctctgtttggct
tgtggatcttctgatgggaacatttccattttcacagcaagatcagaagatgtttgggag
acatcacggattgatcaggctcatccagtaggtgttacatctgtttcgtgggcgccatca
acagctcctggctctcttgtaggctctgatctgcttaatcccgtgccgaagcttgcatct
ggtggctgtgacaatacagttaaagtgtggaagctgtttgatggaacttggaagttggat
tgcttcccagttcttcaaatgcacactgattgggtgagggatgttgcttgggcccctaac
ttggggctaccaaagtcaactatcgcgagtgcttctgaagatggaagagtgattatatgg
acagttggtaaagaaggtgatcaatgggttggtaaagtgttaaaggattttggtgccccc
gtttggagagtttcatggtcactaacaggaaacatattggctgtggctgatgggaataac
aatgtgacattgtggaacgaagcagtagatggtgaatggcaaccagtgacaacagtagat
acataa

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