Solanum stenotomum: 125861231
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Entry
125861231 CDS
T08385
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125861231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125861231
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125861231
Spliceosome [BR:
sstn03041
]
Complex A
U2 snRNP components
U2 related factors
125861231
Complex B
125861231
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
125861231
NCBI-ProteinID:
XP_049397132
LinkDB
All DBs
Position
4:complement(701670..705366)
Genome browser
AA seq
1123 aa
AA seq
DB search
MEELKHKSKREDESKKRHRDKEDRDREKKDRDHHHRDKKDREREKSSRYEREKSADRDRA
KHKDRHSRGDKEREKSSKVRDDDDRPRDKVKEREKDKEDREEREREKEREREKERERERE
KERERERKRDRERREREKEKERNREKDRHREVYEKGSDDEVDAKDRERKRRKRDNDDHHK
ERDRERSSKPNNRLREESTDEVSAEKDQKSREEDLAEEQRKLDDEMEKRRRRVQEWQELK
RKKEESERETLGVDAGAEEPKLGKTWTLDGESDDEDAEGKTGMDIDMDDSGKVMEDENGA
DKVVSSSIGSDSPVIQNGSDGIVDDDEIDPLDAFMNNMVLPEVEKLNKSVVNSLDGENSS
LKEKNGLRKEEKPKMSMKKTTGRIIPGEDSDSDYGNVENDEDPLEEEDDEEFMKRVKKTK
AEKLSLVDHSKIEYPPFRKNFYIEVKEISRISAEEVSAYRKQLELKIHGKDVPKPIKTWH
QTGLSSKMLDTIKKLNYEKPMSIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIK
DQPPLMSGDGPIGLIMAPTRELVQQIHSDIKKFARVMGLTCVPVYGGSGVAQQISELKRG
AEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQ
TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE
WYEKGKILIFVHTQEKCDALFRDMLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA
TSIAARGLDVKELELVINYDVPNHYEDYVHRVGRTGRAGKKGCAITFISEDDARYAPDLL
KALQLSEQVVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQA
KEYGFEEDKSDSEDEDEGIRKAGGDLSQQAALAQAAALVAASKASMASAAAPVSAGQLLP
NGGLPVALPGVLGINIPGATAVAAGNGLSVGSNDVTARATALAAALNLQHNLAKIQADAM
PEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYVPPGKVPGFGERKLYL
FIEGPTEQSVKRAKAELKRVLEDITMQASSLPGSAQPGRYSVV
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atggaagagttgaagcacaagtcgaagagagaggacgagtcgaagaagcgccaccgtgat
aaggaggatcgagaccgtgaaaagaaggacagagaccatcaccatcgtgataagaaggat
cgcgagagagagaaaagcagccgctatgaaagggagaaaagtgctgatagagatagggca
aagcacaaggataggcacagtagaggagataaagagcgtgaaaagagcagcaaggttcgt
gatgatgatgacagacctagagataaagttaaagagcgagaaaaggataaggaagatcgt
gaagaaagagagagggagaaagagagggaaagggagaaggagagggaacgcgagagggag
aaagagagggaacgtgagaggaaaagagatagagagaggagagaaagggagaaggagaag
gagaggaatcgcgaaaaggatagacaccgggaagtatatgaaaagggaagtgatgatgaa
gttgatgcgaaggatcgtgaaaggaagaggcgaaagagggataatgatgatcatcacaag
gagagggatcgtgaaaggagtagcaaaccaaacaacaggctaagggaagagagcactgat
gaagtatcagctgaaaaggatcagaagagtcgagaagaggatctagctgaggagcaaagg
aaattagatgacgagatggagaagcgaaggaggagagttcaggaatggcaagagctaaaa
agaaaaaaagaggagtctgagagggagacacttggggttgatgcaggtgctgaagaacct
aagttgggcaagacttggacattggatggtgagtctgatgatgaagatgctgaggggaaa
actggcatggatattgatatggatgatagtggcaaggtcatggaagatgaaaatggagct
gacaaggtggttagttctagcattggatctgattcccctgttattcagaatggcagtgat
ggaatagttgacgatgatgagattgacccgttggatgcttttatgaacaatatggttttg
cctgaagttgagaagcttaacaaatccgtagtcaatagtttggatggtgaaaattccagt
ttgaaagagaaaaacggtctgaggaaggaagaaaagcctaagatgagcatgaagaaaacc
acgggaagaattatccccggtgaagattcggattcagattatgggaacgttgagaatgat
gaagatcctttggaggaagaagatgatgaagaatttatgaaacgggtgaagaaaaccaag
gccgagaaactatcattagtggatcattcaaagattgaatatcctcctttcagaaagaac
ttctacatagaagttaaggagatttcaagaatcagtgctgaagaggtttctgcttacagg
aaacaactggaattgaagatccatggcaaggatgttccgaaaccaatcaaaacatggcat
cagactggactgtcctccaagatgttagacactattaagaagctgaattatgagaagccc
atgtctattcaagctcaggctctgccagtaattatgagtggccgagattgtattgggatt
gctaagacaggttctggtaaaactctggcatttgtattaccaatgctgagacatattaag
gaccagcctcctctgatgtctggagatggtcctattgggctaataatggcccctactaga
gagcttgtacagcaaattcatagtgatattaagaagtttgcgagagtgatgggtctcacc
tgtgtacctgtgtatggaggttctggtgttgctcaacaaattagtgaattgaaacgagga
gccgaaattgttgtgtgcactccaggtcggatgattgatatactctgtacaagtggtggg
aagattacaaatctgcgaagagtcacgtatttggtcatggatgaagctgatcggatgttt
gatatgggatttgaacctcagatcacaagaattgtccaaaacactcggcctgaccgtcaa
acagtcctgttctctgcaacttttcctcgtcaggttgaaatactagctcgtaaagtgttg
aacaagcctgttgaaatacaggtaggtggtaggagtgttgtgaacaaggatataacacaa
ttggttgaggtgaggccagaaagtgatagattccttcggcttcttgagttacttggtgaa
tggtatgaaaaaggtaaaattttgatatttgttcacacacaggagaaatgtgatgcttta
tttagagatatgctcaagcatggttatccctgtctctcccttcatggggcaaaagatcag
actgatcgtgagtccaccatatccgactttaaaagtaatgtatgtaatttgttgattgct
actagtatagcagccaggggcttagatgtcaaggagcttgaactggtaatcaattatgat
gttccgaaccattatgaggactatgttcatcgtgttgggcggactggtcgagctggtaag
aaaggttgtgccatcacattcatatccgaagatgatgcaagatatgcacctgatcttcta
aaagctttacaattgtcggagcaagttgttccagatgacctgaaagctcttgctgatggt
ttcatggcaaaggttaatcagggacttgagcaagcacatgggactggttatggtggtagt
ggttttaaatttaatgaagaagaggatgaagtgagaagagcagccaaaaaagcacaggca
aaggaatatggatttgaggaagataaatcagattcagaggatgaagatgaaggaattaga
aaagcaggtggtgacctctctcagcaggctgcccttgctcaggctgctgctcttgttgct
gcttccaaagcgagtatggcttcagcagcagctccagtttcagctggtcagcttcttccc
aatggtggattacctgttgcattgcctggtgtacttggtattaatataccaggtgcaaca
gcagttgctgctggaaatggactatcagttggctctaatgatgtgacagccagagcaaca
gcattggcagctgccttgaacttgcagcataacttggcaaagattcaggccgatgcaatg
cctgaacattatgaagcagaattagagataaatgattttcctcaaaatgctcgttggaag
gttacacacaaggagacgttgggtcctatttctgaatggacaggagctgccatcaccact
cgaggacagtatgttccacctggcaaggtaccagggtttggggaaaggaagctgtacttg
ttcattgaaggccctacggagcaatctgtcaagagagcaaaagcagaattaaaacgtgta
ttggaggacattaccatgcaagcatcatcacttcctggttctgctcaaccgggcagatac
tcagttgtataa
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