Solanum stenotomum: 125861301
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Entry
125861301 CDS
T08385
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125861301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125861301
03009 Ribosome biogenesis [BR:
sstn03009
]
125861301
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125861301
Spliceosome [BR:
sstn03041
]
Complex A
U1 snRNP components
U1 related factors
125861301
Complex B
125861301
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Helicases
125861301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
125861301
NCBI-ProteinID:
XP_049397188
LinkDB
All DBs
Position
1:complement(32870727..32879977)
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AA seq
1162 aa
AA seq
DB search
MTTPEAATASLGPRYAPDDPNLPQPWKGLVDGSTGLLYFWNPETNVTQYEKPSALPPPLP
PGPPPEASAPKLAPIPGASTVQQYDSQGQQNQQAFAQQGQMTHMSQHPQVTQQVPHGSQG
VSTGQQQGSPAGPAIQQVSFMPQLRSQMIQQPGHQMPLQMGQTPNQPGPHVSQPAVQQIM
PQQLGSQAQAFPSVQMGQPHGYQFSHQQAQHVAYPQNLPPQGQQIPQQQNQHVPQNQQFS
HQQEHKVGFQQREEVDFPQGKQVGFSPQQVQQTGASSAQNPQVGTGSVIRPQMSAQPAQA
LQFGGSSVNVQQPSSLGQWQQNTNDSGQRPPGPRFPGQMGSSMSHGHELDTPPVGSKGYE
ENAVGRGGNDYYYNSNMDSRIRPPPQQPKLAAIPVARNQHEMRMGDPPLQNPVPTLPSGF
NSMGGPPMQNIYGQAAGGPPFSNPNLMRPPGALTGPPGSIHPSSVEVYLQKHEVTATGGD
VPAPFMTFEDTGFPPEILREIQFAGFTSPTPIQAQTWPIALQNRDIVAIAKTGSGKTLGY
LIPAFVHLKRRHNNPQNGPTVVVLSPTRELATQIQDEALKFGRSARVSCTCLYGGAPKVH
QLKELERGTDIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEI
PPQRQTLMYTATWPKEVRKIAGDLLRNPVQVNIGNVDQLAANKSITQYIEVVPQMEKQRR
LEQILRSQERGSKAIIFCSTKKLCDQLARSIGRNFGAAAIHGDKSQGERDWVLNQFRAGK
TPILVATDVAARGLDIPDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFLSDQDWK
YAPDLVKVLEGANQQVPPDVREMALRAGGRDRGGMNRSDLVDGDGVRTRWDSGGRGGMRD
GAFGGRGGMRDGGFGGRGMRDGGFGGPGGMRDGGFGGPGGMRDGGFGGRGGRESNFGGRG
GRDGHFGGRVGMRDNNFGGRGGRGGAQSVWDRNDRYDSSDVRGRGRGRGRGRFDNRRDMP
SRSRGRSYSPSPERVRTWGSRSRSRSRSRSRSYSRSYSRSRSRSYSPRRSRSRSRSRSRD
RYQRRPRQSKFDQMDPDPGMSSIQVAPPSVMPPLPIGAPVDGFSGATSVESKPNMEVAPE
SGMSPMSPGTRGNGLPGSEVIE
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgacaactcctgaggcagctacggcttccttgggacctcgttatgcacccgatgatcca
aatttaccccaaccttggaagggcttagttgatggtagtactgggttattgtacttctgg
aatccagaaactaatgttactcagtacgagaagccatcagctttacctcctccactgccg
cctggtccacctccggaagcttctgcacctaagttggctcctataccaggagctagcact
gtgcaacaatatgatagtcaaggccaacagaaccaacaggcgtttgctcaacaaggccaa
atgacacacatgtcacaacatccacaagtaacacaacaggtaccacatggatcacaaggt
gtttcaacagggcagcaacaaggatcaccagctggtcctgccatccaacaggtatccttt
atgccacaacttcggtctcaaatgatccagcaacctggtcatcagatgccattgcaaatg
ggacaaactcccaatcagccagggccgcatgtttctcaaccagcagtacaacaaataatg
ccacaacaactaggctcccaagcacaagcattcccaagtgtacaaatgggacaaccacat
ggttatcaattttctcatcagcaggcacagcatgttgcgtatccacaaaatttgcctcca
cagggacagcaaattccacagcagcaaaatcagcacgttccgcagaatcaacagttttct
catcaacaagagcataaagtgggatttcagcaaagggaagaagttgatttcccccaaggt
aaacaagttgggttttcgccacaacaagttcagcaaactggtgcatcatctgctcagaat
ccgcaagtggggactggttctgttatcagacctcagatgtctgctcagcctgctcaagct
ttgcagtttggcggttcttctgtaaatgtccaacaaccatcatctttgggtcaatggcag
caaaatacaaatgattcaggtcagaggccgcctggtccacgctttcccggtcagatgggc
tcaagtatgtcacatggtcatgagctggatacacccccagttggatcaaagggttatgag
gaaaacgcagtcggaagaggaggaaatgactattattacaacagtaacatggatagtcga
attaggcctccgcctcagcaacccaagcttgcagctatacctgtagcaagaaatcagcat
gaaatgagaatgggtgatcctccgcttcaaaatccagtaccaactcttcctagtgggttc
aatagcatgggtggtcctccgatgcaaaatatctatggtcaagcagctggtggccctcct
ttttcaaatcctaacctcatgcggccacctggagcactcacaggacctccaggatccatt
catccatcatctgttgaggtttacctgcagaagcatgaagtaactgcaacaggtggtgat
gtccctgctccattcatgacatttgaagatactggcttcccgccagaaatactaagagag
attcagtttgcgggattcacttcacccactcccatccaggcacaaacatggcccatagcg
ttgcaaaatagggatatagtggccattgccaagacaggttctggcaaaacattgggctat
ctaattcctgcatttgtccaccttaaacgacggcacaacaatcctcaaaatggcccgaca
gtggtggttttatctccaacacgagagcttgccacacaaatacaagatgaagcgctgaag
tttggtcgatctgcaagggtttcttgcacgtgcttgtatggaggtgcacccaaagttcac
cagttgaaagaactagagcgcggaacagatattgttgttgcaactcctggtcggcttaat
gacatccttgaaatgaaaagaattgactttagacaggtttctcttctcgtgctagatgag
gctgatcgaatgcttgacatgggttttgaacctcagatccgcaagattgtaaatgagata
cccccacaaagacaaacacttatgtacacagcaacttggcccaaagaagtgcgaaaaata
gccggtgatcttcttcgaaatcctgtccaggttaatattggtaacgttgatcagcttgca
gcaaacaagtctatcacacagtacattgaagtagtcccgcaaatggagaagcagagacgg
ttggagcagattcttagatcccaagaaaggggttctaaagctattatattctgttccaca
aagaagttgtgcgaccaacttgcacgcagtattggtcgaaactttggagctgcagctatt
catggagacaagtcccagggtgagagggactgggttctcaatcaatttcgcgctggtaag
accccaattttagtagcaacagatgttgctgctagaggactggacatacctgatataaga
gtggtgatcaactatgattttccgactgggattgaggattatgttcaccgaattggaaga
actggtagggctggtgcaactggtgtttcatacacctttttatctgatcaggactggaaa
tatgctcctgatcttgttaaagttctggaaggcgcaaatcagcaagtgcctccggatgtt
agggagatggctttacgtgctggtggcagggatagaggtggcatgaaccgttctgatctt
gtcgatggtgatggtgtccgcacacgttgggattctggtggccgcggtgggatgagagat
ggtgcatttggtggccgtggcggaatgagggatggtgggtttggtggccgtggtatgagg
gatggtgggtttggtggtcctggtgggatgagagatggtgggtttggtggccctggtggg
atgagagatggcgggtttggtggccgtggtggaagggagagcaactttggtggccgtggt
ggaagggatggtcactttggtggccgtgttgggatgagggacaacaattttggtggccgt
ggtggcaggggtggtgctcaaagtgtttgggacaggaatgatcggtatgacagttcagat
gtgcgaggacgtgggagaggtcgcgggcgtggacgtttcgacaatagaagagacatgcca
agtcggagtcgaggaagaagttacagccctagtccggagagagttcgaacatggggtagt
agaagcagaagcaggagtcgcagcagaagcaggagttatagtaggagttacagccgaagc
cggagccgcagctacagccctaggcgcagtcgtagccgcagccgtagtcgtagtcgtgat
agatatcaaaggaggcctcgccaaagtaagtttgatcagatggatccagatccaggaatg
tcaagcattcaggttgctcctccatctgtgatgcctccgttgcctataggtgcaccagtt
gatggattttctggagctacgtcagtggaatcgaaaccaaatatggaggtagccccagaa
tctggtatgtcacctatgtctccaggaactcgaggaaatggcttgccaggatctgaggtc
atagagtag
DBGET
integrated database retrieval system
