Solanum stenotomum: 125861771
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Entry
125861771 CDS
T08385
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sstn03016
]
125861771
Enzymes [BR:
sstn01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
125861771
Transfer RNA biogenesis [BR:
sstn03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
125861771
Prokaryotic type
125861771
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
FliD_C
Motif
Other DBs
NCBI-GeneID:
125861771
NCBI-ProteinID:
XP_049397591
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All DBs
Position
4:54617604..54642326
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AA seq
507 aa
AA seq
DB search
MAGLCVRLPQIPVTNLRFSRSGTLKIVRCFSTSPEDLSVQSNKWDPFIKKKVVMRVGYVG
SDYRGLQMQRDEHQLSTIEGELEKAIFKAGGIRDSNFGNLYKIGWARSSRTDKGVHSLAT
MISLKMEIPADAWEDDPNGITLANCVNSSLPENIRVFSILPSKKRFDARRECNARKYSYL
IPAEIIGIKNDSTSSEIEYHIANFNDILNSFEGEHPFHNYTIRSKYRKQSPARNLLKNDS
LLKKGRPSSEKEISGSEESDGEQNGKEKGVVTIVEAGNQNPEGNCNEKVSHSKDLNSVIP
IQARWLHEPDARDKLSSAHFRRIFHCHCGKLEKLLGMNYVEVSICGESFMLHQIRKMVGT
AVAIKRNLLPHDILRMSLCKFSRIVLPLAPSEVLVLKGNNFALRNHPGNIIRPEMLTLLE
SDDILKAVDDFYYSKMLPQLSRFLDPSKSPWSEWVEILDANTSIPDSQLEEVRVAWKLWK
AQYDSRTEFPSVLAQGTLCIITNLMFC
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcagggctttgtgtgcggcttcctcaaatccctgtcacaaatctgagattttcacgt
tcaggcaccctaaagatagtgcggtgcttttcgacatcacctgaagacttatctgtgcaa
agcaacaaatgggatcctttcataaaaaagaaagttgtgatgcgcgtgggatacgtgggc
tctgattatcgaggtttgcaaatgcaaagagatgaacatcaactctccaccattgaaggt
gaactggaaaaagctatcttcaaagctggtggtattcgagacagtaattttggaaattta
tataaaattggctgggcgagaagtagtcgaaccgataaaggagttcattccttggcgaca
atgatatctcttaaaatggagattcctgcagatgcatgggaggatgatccaaatgggatc
actcttgctaattgtgtgaactcaagtcttccagagaatatcagagttttcagtattcta
ccctcaaaaaagaggtttgatgccagaagagagtgtaatgcacgcaagtattcttatctc
attcctgctgaaatcatcgggataaagaatgattcaacttcttctgaaatcgagtaccat
atagccaattttaatgacatactgaattcttttgagggagaacatcctttccacaattac
acaatacgatctaagtacaggaaacaatctcctgccagaaacttgttaaaaaatgacagt
ctcttaaaaaaagggaggccctctagtgagaaagaaatatctgggtctgaggaaagtgat
ggagaacaaaacggtaaagagaagggggttgtgacgattgttgaggctggaaatcaaaat
ccagaaggcaactgtaatgagaaagttagtcattcaaaggatctcaattctgttatacca
attcaagcaagatggctccatgaacccgatgcaagagataaacttagctctgctcatttc
cgaaggatttttcactgtcattgtggaaaattggagaagttgcttggcatgaattatgtt
gaagtttccatctgtggagagtcattcatgttacatcaaatacgcaaaatggtagggaca
gcagttgcgataaaacgcaatcttctaccacatgatattttgagaatgtcgttatgcaag
ttttcaaggattgtcttacccctagccccatcagaagttttggttttgaaggggaacaat
tttgctttgagaaaccatccaggcaacataataagacctgaaatgttgacattgttggaa
tcagatgatattctcaaggcagttgatgacttctattactctaaaatgttacctcagctg
tctagatttttagacccttcaaagtccccttggagtgagtgggtagaaatactggatgca
aacacaagcattccagattctcaattagaagaagtaagggttgcttggaaattgtggaag
gcacaatatgatagcagaactgagtttccatcagtattggctcaaggtacattatgcatt
atcactaatttgatgttctgttga
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