KEGG   Solanum stenotomum: 125861945
Entry
125861945         CDS       T08385                                 
Name
(RefSeq) splicing factor U2af large subunit A-like isoform X1
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
sstn  Solanum stenotomum
Pathway
sstn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sstn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125861945
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sstn03041]
    125861945
Spliceosome [BR:sstn03041]
 Complex A
  U2 snRNP components
   U2 related factors
    125861945
 Complex B
    125861945
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_occluded Transformer RRM_PARP14_3
Other DBs
NCBI-GeneID: 125861945
NCBI-ProteinID: XP_049397819
LinkDB
Position
4:65156940..65165874
AA seq 605 aa
MDSNENGLTQLTPSDTGGDNEIAGVDNGEEEHNSSKRRSSSKPSSRDYEGERESSRSRDR
EGEKGRDKDRGRSRDKDRDREKDRDRRHSDRSERSRTKGRDDDANVSDGGPESREYWQKD
YDRERDERHKHRSKSYEREREERHRHRSKSYDKDREERDRHRSKSYDKDREDRHGRRSHS
RGTSSHRSRSRSGSRSRSKSKRVSGFDMAPPTSALLSGAPALIASAGLLPGTAPAIPGML
PNMFPLASGPLGAIPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVATYFNHVMSAIGG
NTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGTQVKVRRPTDYNPSLA
ATLGPSQPNPNLNLAAVGLSPGSTGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGF
NLVKDKETGNSKGYAFCVYADVSVTDIACTALNGIKMGDKTLTVRRASQGTLQPKPEQEI
VLMHAQQQIALQRLMLQPGGPPTKVLCLTHVVSPDELKDDEDYEDIVEDMRMECGKFGNL
VNLVIPRPRTDGEPTPGVGKVFLEYADVESSSRAQQGLNGRKFGGNEVVAVFYPENKFSE
GDYEG
NT seq 1818 nt   +upstreamnt  +downstreamnt
atggattccaatgaaaatgggcttactcagctcactcctagtgatactggtggtgataat
gaaatagctggtgtggataacggagaagaagagcataactcgagcaagagaagatcaagc
tctaagcctagttcccgtgattatgagggtgaaagagaatcttcaagaagcagagacaga
gagggggaaaaaggacgtgataaggacagaggtaggagcagagacaaagatagagatcgg
gaaaaagatcgcgatcgtcgccacagcgatcgaagcgagaggagtaggactaaaggtaga
gatgatgatgctaacgtttctgatggtggtcctgagagtcgggaatactggcagaaagat
tatgatagagagagggatgagaggcacaaacataggtcaaaatcttatgagagagagcgg
gaggaaaggcatagacacaggtccaaatcatacgacaaggatagagaggaaagggatagg
cacaggtcaaaatcctatgacaaagatcgagaggataggcacggacgtagatctcactca
aggggaacatctagtcataggtccagatcacgttctgggtctcgttcacgctccaaaagc
aaaagggtcagtgggtttgacatggcacctcctacttctgctctgttatctggtgctcct
gctcttatagcttctgcaggtctactccctggcactgccccagctattcctggaatgctt
cctaacatgttccctttggcctctggaccgcttggagctattcctgttctgccagttcag
gcaatgactcagcaggcaacgagacatgcaaggcgagtttacgttggtggacttcctcca
actgcaaatgaacagtcagtggctacatacttcaatcatgttatgtcagctattggtgga
aacactgccggtccaggtgatgcggtcgttaatgtttatataaaccatgagaaaaagttt
gcatttgttgagatgagatctgtggaggaggccagcaatgccatggccttagatggcatt
atctttgagggaacacaagttaaggtcagaagaccgactgactataatccctctctggct
gcaactcttggtccgagccaaccgaatccaaaccttaaccttgctgcagtaggattatca
ccaggatccactggtgggcttgaaggtcctgaccgtatttttgtgggaggcctgccttac
tatttcactgaagctcagattagggagttgctggagtcctttggccctcttcgggggttt
aatctggtcaaagataaagaaactggaaactcgaaaggctatgcgttttgtgtctatgct
gatgtgtcagtaacagatattgcctgtacagctctgaatggtattaagatgggtgataaa
actcttactgtcaggcgtgcaagtcaaggtactttacagcctaagccagagcaggagatt
gtattaatgcatgctcagcaacaaatagcactgcagagactcatgctacaacctggagga
cctcctactaaagtcttatgcctaacacatgtggttagcccggatgagctcaaagatgat
gaagactacgaagatatagtggaagatatgagaatggaatgtgggaaatttggtaattta
gtgaatttagtcatcccacgcccaaggaccgatggtgaacctacacctggggttggaaag
gtctttttggagtatgcggatgtggagagttcttcgagagctcaacaaggattgaatggc
agaaaatttggaggaaacgaagttgttgctgtcttttatccagagaacaagttctccgag
ggggactatgagggctag

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