Solanum stenotomum: 125862270
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Entry
125862270 CDS
T08385
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125862270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125862270
03009 Ribosome biogenesis [BR:
sstn03009
]
125862270
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125862270
Spliceosome [BR:
sstn03041
]
Complex A
U1 snRNP components
U1 related factors
125862270
Complex B
125862270
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Helicases
125862270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Arylesterase
Motif
Other DBs
NCBI-GeneID:
125862270
NCBI-ProteinID:
XP_049398263
LinkDB
All DBs
Position
4:complement(50059675..50067325)
Genome browser
AA seq
613 aa
AA seq
DB search
MAAILTASSGPSYAPEDPTLPKPWKGLVDGTTGYIYFWNPETNDTQYEKPVHSSNGVSAP
AQKSAVFVSSSVQKPSQGQHYDPNGRHSRGSNSKVTSLKGDQNARSSSDHHEGYDSLGVG
TDISQESYCRHNEISVMGGDVPAPLTSFEATGFPSEIVREMHQAGFSAPTPIQAQSWPVA
LQGRDIVAIAKTGSGKTLGYLIPGFIHLKNRRSNPQLGPTILVLSPTRELATQIQAEAVK
FGKSSRISCTCLYGGAPKGPQLRELSRGVDIVVATPGRLNDILEMRRLSLGQVSYLVLDE
ADRMLDMGFEPQIRKIVKEVPTQRQTLMYTATWPKGVRKIAADLLVNSVQVNIGNVDELV
ANKSITQHIEVLSPMEKQRRLEQILRSNEPGSKIIIFCSTKKMCDQLSRNLTRNFGAAAI
HGDKSQGERDYVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNFDFPTGIEDYVHRIGR
TGRAGASGLAYTFFSDQDAKHALDLVKVLEGANQSVPTELRDMVSRGGGMGKARWGSGQG
GRGGRFNGSYVGRNGGRGGGWNNSSSERGGGRGYDRGSRDSDRYLNADASRKRSRSRSPN
KGSGWSDKKSRFT
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggctgctattttaactgcatcctctggtccaagctatgcaccagaagaccctactctc
cccaaaccttggaaaggcctagttgatggtacaactggatatatctacttctggaatcca
gagaccaatgatacccaatatgagaagcctgttcactcatccaatggagtgtctgctcca
gcacaaaagtcagctgtatttgttagttcatctgttcaaaaaccctctcaaggtcaacat
tatgatccaaacggtaggcatagcagaggtagcaacagcaaggttacatccctgaaggga
gatcagaatgcgagaagcagttcagatcatcacgaaggctatgattctctaggtgtagga
actgacatatctcaggaatcgtattgccgccataatgagatctctgttatgggaggtgat
gttcctgcacctttgacatcatttgaagcaactgggtttccttcagagattgtgagggag
atgcatcaggctgggttttctgctcctactccaattcaggcacaatcttggcccgttgcc
cttcagggccgtgacatagtagccattgcgaagactgggtctgggaaaactttgggttac
ttgattccaggatttattcatctaaaaaatcgtcgcagtaatcctcaattaggcccaact
attttggtgctctcaccaacaagagagttagccacgcagatacaagctgaagctgtaaag
tttgggaaatcctctaggatatcttgcacgtgcctgtatggaggtgctccaaaaggtcct
caactccgagagctgagtaggggtgtagatattgttgtcgccactcctggtcgtttgaat
gacatactggaaatgagaaggcttagtcttggtcaagtttcttacctggtgttagatgaa
gcagatcgtatgctagacatgggatttgaacctcagataagaaagattgtgaaagaggtg
cctacgcagaggcagacattgatgtatacagctacatggccgaagggggttcgtaagatt
gcagctgatctattggttaattcagttcaggttaatattggtaatgttgacgagcttgtt
gcaaacaagtctataacacagcacattgaagtcttgtctccgatggagaaacaacggcga
ctagaacaaatcttgagatccaatgaaccagggtcaaagatcattatcttctgttcaaca
aagaaaatgtgtgaccaactatctcgcaatcttactcgcaactttggagcagctgcaatt
catggggataaatctcagggtgagagggattatgtattaagtcagttccgcactggcagg
tctcccgtgcttgtggctactgatgttgctgcgcggggtctagacatcaaagatatcagg
gtggtggtaaactttgacttcccaactggaatagaggattatgtccacagaattggtagg
acaggtcgggcaggggcatctggtctggcctatacatttttctccgatcaggatgctaag
catgctttagatcttgttaaagttttagaaggtgcaaatcaatctgtgccaactgaactg
cgtgatatggtttcacgaggtggtggtatgggaaaggctaggtggggttctggtcaaggt
ggacgcggtgggcgcttcaatggaagctatgttggtcggaatggaggaaggggaggaggc
tggaataattcatcatcagaaagaggcggaggacgtggttatgaccggggatcacgtgat
agtgacagatatctcaatgcggatgcttcaaggaagcgtagtcgcagcagaagccccaac
aagggttcaggatggagtgataaaaagagccggtttacctga
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