Solanum stenotomum: 125862276
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Entry
125862276 CDS
T08385
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
KO
K14962
COMPASS component SWD2
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125862276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125862276
03036 Chromosome and associated proteins [BR:
sstn03036
]
125862276
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125862276
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
125862276
COMPASS/SET1 complex (yeast)
125862276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
EIF3I
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_Nup120_160
WDR90_beta-prop_4th
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
PQQ_3
NBCH_WD40
WD_LRWD1
Beta-prop_VPS8
MIOS_WD40
DUF2963
Methyltransf_13
Motif
Other DBs
NCBI-GeneID:
125862276
NCBI-ProteinID:
XP_049398272
LinkDB
All DBs
Position
4:complement(48588489..48601192)
Genome browser
AA seq
334 aa
AA seq
DB search
MMALSELTDDIVGSMAVGATFSDFGGQINSLDFHRTEDLLITASEDDSIRLFDIANGKLL
KTTYHKKHGADRICFTHHPHSVICSSIHNLDVHGESLRYLSMYDNRCLRYFKGHKERVVS
LCMSPVNDSFLSGSLDHSVRIWDLRVNACQGILRLRGRPAVAYDQQGLVFAVAMEGGAIK
LFDSRHFDKGPFETFLVGGDTAEVCDIKFSNDGKSMLLTTTSNSIYVLDAYAGEKRCGFN
LDPSPIAMEATFTPDGQYVFSGSGDGSLHAWHIDTQKKICSWDSHIGVASCLKWAPRRVM
FVAASSVLTFWIPDHRGPGEAAGVQVEEQVTLTQ
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgatggcactgtcggagctcaccgatgacattgttgggagcatggccgttggagccact
ttctcagattttggtgggcagataaactcacttgattttcatcggacagaagatttgctg
ataaccgctagtgaggatgactcaattcgactttttgacattgccaatggaaagttgctg
aagactacatatcataagaagcatggagctgatcgaatatgctttacccaccaccctcat
tctgttatatgctcttcaatacacaacttggatgtgcatggagagtctttgcggtaccta
tccatgtacgataatcgatgtcttcgttactttaagggacataaagagagggttgtgtca
ctgtgcatgtctccggttaatgacagctttttgtctggatctcttgaccatagtgtgaga
atatgggatcttcgcgtaaatgcatgccaggggattttgcgtctaagaggtaggcctgca
gttgcttatgaccaacaaggcctcgtctttgcagtggcaatggaagggggtgccatcaaa
ttgtttgattcaagacattttgacaagggtccctttgaaaccttcctagtgggtggagat
acagctgaggtttgtgacataaaattcagcaatgatggaaaatcaatgcttttaacaact
actagtaatagcatctatgtgcttgacgcctatgcaggagagaagcggtgtgggtttaat
ctggatccttccccgatagcaatggaggcaacctttacaccagacggccagtatgttttt
tcaggttcaggagatggaagcttgcatgcgtggcacatcgacacgcaaaaaaagatttgt
agctgggatagccacataggtgtggcatcgtgcttgaaatgggcgccaagaagagtcatg
tttgttgctgcatcatcagttcttaccttttggattcctgatcatagaggtcctggtgaa
gccgctggagtccaagtagaagaacaagttactcttactcaatga
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integrated database retrieval system
