Solanum stenotomum: 125862486
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Entry
125862486 CDS
T08385
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125862486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125862486
03009 Ribosome biogenesis [BR:
sstn03009
]
125862486
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125862486
Spliceosome [BR:
sstn03041
]
Complex A
U1 snRNP components
U1 related factors
125862486
Complex B
125862486
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Helicases
125862486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
125862486
NCBI-ProteinID:
XP_049398530
LinkDB
All DBs
Position
4:8358178..8366292
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AA seq
533 aa
AA seq
DB search
MSRYDSRPADPGSYRDRRSDSGFGGGPNYRSSSSSRRDSEGKESPRKVNLDDLTPFEKNF
YVESPSIAAMTEGEVEEYRLRREITIEGRDVPKPIKSFHDVGFPDYVLQEIEKAGFTEPT
PIQAQGWPMALKGRDLIGIAETGSGKTIAYLLPAIVHVNAQPILDHGDGPIVLVLAPTRE
LAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTN
LRRVTYLVLDEADRMLDMGFEPQIRKIVSQVCFCNYLLDPKLSFPSFLDMGFEPQIRKIV
SQIRPDRQTLYWSATWPKEVEQLARQFLFNAYKVIIGSADLKANHAIRQHVEIVSESQKY
NKLVKLLEDIMDGSRILIFMDTKKGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFK
AGKSPIMTATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGASGTAYTFFTAA
NARFAKDLVNILEEAGQKVGPELAKMGRGAPPPPGHGGFRDRGRGYGGNKQWS
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctacgacagccgtccggctgaccctggctcttaccgtgaccgtcgcagtgat
tcaggcttcggtgggggcccaaattataggtcatcatcatcgagcaggagagattccgag
ggtaaggagtctccacggaaggttaatttggatgatttgactccattcgagaagaatttc
tatgttgaatcaccatccatagcagcaatgactgaaggtgaggtggaagagtatagacta
cgacgggagatcactattgagggtcgtgatgtgcccaagcctataaagtcctttcatgac
gtaggatttccagattatgtcttgcaagaaattgaaaaggctggcttcactgaacctaca
cctattcaagctcaaggttggcctatggccttgaagggtcgtgatctcattggtatagca
gaaacagggtctgggaagacaattgcttatctgttgcctgcaattgtgcacgttaatgcc
cagcccattttagatcatggagatggtccaattgtcttagtgttagccccaactcgtgaa
cttgctgttcagattcaacaagaagctactaaatttggtgcatcatcacggattaagaat
acctgcatttatggtggggttccaaaggggccccaagttcgtgatcttcagaaaggtgtt
gaaattgttattgccacacctggaaggttgattgatatgttagaatctaatcatacaaac
ctgcgaagagtgacatatctcgtgctggatgaggctgaccgcatgctagacatgggtttt
gaacctcagatccgcaaaattgtttctcaggtttgcttctgtaattacctgttagatcca
aaattgagtttcccttcttttctagacatgggttttgaacctcagatccgcaaaattgtt
tctcagattcgtccagatcgtcaaacgctgtattggagtgccacatggcccaaagaagtt
gagcagcttgcaagacaattcctgttcaatgcatacaaagtaattattggttcagctgac
ctgaaagctaatcatgctattcgccagcatgtggaaatcgtctcggagagccagaagtat
aataaattagtaaagttgctggaagatattatggatggtagtcgtattttaatattcatg
gacaccaaaaaggggtgtgaccaagtaactcggcagctccggatggatgggtggcctgca
ctttctattcatggtgataagagtcaagcagaaagagattgggtcctttcagaattcaaa
gctggaaagtctcctataatgacagctacagatgttgctgctcgaggtctagatgtgaag
gatgtaaaatttgtaatcaactatgattttcctggatcattggaggactatgttcatcgc
attggtagaacgggaagggctggtgcctcggggacagcatacacattctttactgcagca
aatgctaggtttgcaaaggatcttgttaacattcttgaggaggccggacagaaagtcggt
cctgaattggcaaaaatgggacgtggtgcgcctccccctcctggtcacggagggtttcga
gaccgtggaaggggttatggaggcaataagcagtggagctag
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