Solanum stenotomum: 125862536
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Entry
125862536 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125862536
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125862536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125862536
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125862536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
DUF2249
Motif
Other DBs
NCBI-GeneID:
125862536
NCBI-ProteinID:
XP_049398589
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Position
4:complement(59885432..59898532)
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AA seq
283 aa
AA seq
DB search
MQSAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLS
PPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLT
SLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDY
ICTTAERFFAVGRVLGNMVGALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSGLPDMLR
DTTFSTCLREDPTTRRWLQQLINNVNGARVALQAGGFDHMLMN
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcagcagagcagcttgtgcttgaactcagcaatcccgatcttagagaaaatgct
cttcttgaactctctaagaagagggaattattccaggacttagccccattactatggaac
tcgtttggtactattgctgcgctcttacaggagatagtttccatctaccctgttttatca
ccgccaaacttgactccagcacaatctaacagagtttgcaatgctttagcacttcttcag
tgtgtagcctctcaccctgacacgagaatgttgtttctcaatgcacatattcctttgtac
ttgtacccttttctgaatacaacaagcaaatcaagaccttttgaatatctgaggcttact
agcttaggagtcattggtgcccttgtgaaggttgatgatactgaagttatcagttttcta
ctatcaactgaaataattcccctgtgcctgcgcacaatggagatgggcagtgaactgtca
aaaacggttgcaactttcattgtgcaaaaaatacttctagatgatgttggtttggattac
atatgtaccacagcagaaagattttttgcagttggccgagttttggggaatatggtaggt
gcacttgctgaacagccttcatctaggttgctgaagcacataattaggtgctatcttcgc
ttgtcagacaatccaagggcatgtgatgcactaagaagtggtctccctgatatgcttaga
gacaccaccttcagtacctgtcttcgtgaggaccctacaactaggaggtggctacaacaa
ttgattaacaatgttaatggtgcccgtgttgctctacaggcaggtggatttgatcatatg
ctgatgaactaa
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