Solanum stenotomum: 125862622
Help
Entry
125862622 CDS
T08385
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125862622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125862622
03041 Spliceosome [BR:
sstn03041
]
125862622
03009 Ribosome biogenesis [BR:
sstn03009
]
125862622
03016 Transfer RNA biogenesis [BR:
sstn03016
]
125862622
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125862622
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125862622
Spliceosome [BR:
sstn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125862622
Complex C
U4/U6.U5 tri-SnRNP related factors
125862622
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Helicases
125862622
Transfer RNA biogenesis [BR:
sstn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125862622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
125862622
NCBI-ProteinID:
XP_049398697
LinkDB
All DBs
Position
4:57213301..57226792
Genome browser
AA seq
980 aa
AA seq
DB search
MVESPTLKRRLEEENEAESTSKRSRTCLHEVAIPSCFASSNDESLHGTLSNPVYNGKMAK
IYPFKLDPFQEISVACLERKESVLVSAHTSAGKTAVAEYAIAMSFRDKQRVIYTSPLKAL
SNQKYRELSEEFSDVGLLTGDVSISPNASCLVMTTEVLRTMLYVGSEVLKEVAWVIFDEI
HYMKHRERGVVWEESIIFLPPAIKMVFLSATMSNPMEFAEWICNIHKQPCHVVYTDFRPT
PLQHYAFPKGGSGLYLVVDDNDQFREDNFLKLRETFTKKKPGSSSAKASGRSGEGGNASG
VSDIYKIVKMIMARKFQPVIIFSFSRIDCEKHAMCMTKLDFNTEEEKEAVEQVFHSAVAC
LNEEDRNLPAIELMLPLLQRGIAVHHSGLLPVVKELVELLFQEGLIKALFATETFAMGLN
MPAKTVVFTSVKKWDGDAHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEKMEMDSLKD
MVSGNPDPLVSSFRLSYYSILNLLSRTEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKL
EEEGALLDASGEAEVAGYHKLRLEMAQFEKKLMAEITRPERVLYFLLPGRLVKVREGGKD
WGWGVVVNVVKKPPAALGSLPATLSASCAAGYIVDTLLHCSLGSSENGSRPKPCPPRPGE
KCEMHVVPVQLPLISSLSKLRISVPSDLRPLEARQSIFLAVQELEKRFPEGLPKLNPVKD
MGIEDPEVVNMVNQIEELEKKFFSYQLHKSQNEHQLRSFQRKAEVNLEIQQLKSKMRDSR
LQKFRDELRNRSQVLKKLGHIDADGIVQLKGQAACLIETGDNLLATELMFNGTFNDLNHH
QVAALTSCFIPGDRSEEKIQLRDELEKPLQQLQDSARRIAEIQHECKLEIDVDKYVVASV
RPFLMDVIYCWSMGASFAEVIQMTDIFEGSITRLARRLDEFLNQLKAAAHAVGEVDLENK
FGAASDSIRRGIMFANSLYL
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggtggagtctccgacattgaaacggagattagaggaggagaatgaagcagaatctact
tcgaaaaggtcaagaacttgcttgcacgaggtagcaattcccagttgtttcgcttcaagc
aacgatgaatcacttcatggaaccctttcaaatcctgtttataatggtaaaatggcgaaa
atctatccatttaagcttgacccatttcaggaaatctcagtagcgtgtttggagcgaaag
gaatcagttcttgtatctgcacatacttctgctggtaaaactgcagttgcagagtatgca
attgctatgtcttttagggataagcaaagggtaatctatacttcacctttgaaagctttg
agtaatcagaaatacagggagttgagtgaggagttttctgatgtgggtttattgactgga
gatgtttcaatttcaccaaatgcgagttgtttggtgatgacgactgaagttctgagaact
atgctttatgtgggttctgaggtattgaaagaggttgcttgggttatatttgatgaaata
cattacatgaaacatcgagagagaggggttgtttgggaagagagtattatattcttgcca
ccagctattaagatggtttttctttcagcaacaatgtcaaatcctatggagtttgctgaa
tggatttgtaatattcataagcagccttgtcatgtggtttatactgattttcgacccacc
cctttgcagcattatgcgttccctaagggtggttctggattgtatctcgttgttgatgac
aatgaccaatttagggaagacaatttcttgaaattacgggaaactttcaccaagaagaag
ccagggagctccagcgcaaaggctagtggaagaagtggagaaggtggcaatgcttctggt
gtgtctgacatctacaaaattgtcaagatgatcatggcacggaagtttcagcctgtcatt
atattcagttttagtagaatagattgtgaaaaacatgcaatgtgtatgaccaaacttgat
tttaataccgaagaggaaaaagaagctgtggagcaggtattccatagtgcagtggcgtgc
ttgaacgaggaagataggaacttgccagcaattgaattaatgttgccactgcttcagcga
gggattgctgttcatcactctggtttgcttcctgttgtcaaagaacttgtggaacttctt
ttccaagaaggactaataaaggccctttttgccacggagacgtttgccatgggactaaac
atgcctgcaaaaacagtagtttttaccagtgtaaaaaaatgggatggtgatgctcatcgt
tacattggatctggtgagtatatacagatgagtggaagagcaggacgtcgtggcaaagat
gagcgtggtatttgcattatcatgattgatgagaagatggagatggatagcctcaaggac
atggtttcgggcaacccagatccgttggtcagctcctttaggttgagttactactcaatt
ttgaatctattgagccgcactgaaggtcaatttaccgccgagcatgttatcaaaaactca
tttcaccagtttcagtatgagaaggctttacctgacatcgggaagaaggtttccaagttg
gaagaagaaggtgcattgcttgatgcctcaggagaggctgaggttgcaggatatcataaa
ctaaggcttgagatggcccaatttgagaaaaaattgatggctgaaataacaaggcctgaa
agggttctgtattttcttcttcctggtaggctggttaaggtacgagaaggtggaaaagat
tggggttggggtgttgtagtcaatgtggtgaagaagcctccagcagcattgggttctttg
cctgctaccctctctgcttcatgtgctgctggctatattgtggatacgttacttcattgc
tctctgggttccagtgaaaatggttctcgaccaaaaccatgccctcctcgtcccggggaa
aagtgtgaaatgcatgtggttcctgttcagttacccttaatttcttctctcagcaagctt
agaatatctgttccttctgatcttcggcctttggaagcaaggcagagtatttttcttgca
gtacaggagcttgaaaaacggttccctgaaggcctcccaaagctcaaccctgtaaaggac
atgggcattgaagatcctgaagttgttaatatggtgaaccagattgaagaacttgagaag
aagttcttttcttatcaactgcataagtcacaaaatgaacatcagcttaggagtttccag
aggaaggctgaagtgaaccttgagattcaacagctcaagtcaaaaatgcgtgattcacgg
cttcaaaaatttcgggatgaacttaggaaccgctcccaagtcctcaaaaagctgggtcat
attgacgctgatggtattgtgcagttgaagggacaggcagcctgcttgatagaaactgga
gacaaccttctcgcgactgaattgatgtttaatggtacattcaatgatcttaatcatcat
caagttgcggctctgacaagctgctttatcccaggtgatagatcagaggaaaaaatacaa
ttaagagatgaacttgaaaaaccattgcaacagttacaagatagtgcaagaagaatagca
gagatacaacatgagtgcaagctggaaatagatgttgataaatatgtggtggcatcagtt
cgaccattcttaatggatgttatttactgttggtcaatgggtgcatcttttgcggaggtt
atacaaatgacagacatctttgaaggtagcatcactcggctggctagaaggcttgatgaa
tttttaaaccagttgaaagctgctgcacatgctgtgggagaagtagatttagagaacaaa
tttggtgcagcaagtgacagtattcggcgagggataatgtttgcaaattctctctacctg
tga
DBGET
integrated database retrieval system
