Solanum stenotomum: 125862640
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Entry
125862640 CDS
T08385
Name
(RefSeq) protein argonaute PNH1-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125862640
03036 Chromosome and associated proteins [BR:
sstn03036
]
125862640
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125862640
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125862640
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
125862640
microRNA pathway
RISC loading complex
125862640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
PAZ
ArgoN
ArgoL1
ArgoL2
ArgoMid
Selenoprotein_S
Motif
Other DBs
NCBI-GeneID:
125862640
NCBI-ProteinID:
XP_049398715
LinkDB
All DBs
Position
4:complement(63861761..63875622)
Genome browser
AA seq
945 aa
AA seq
DB search
MPQWQMKLDFEQKHMVSRTPLQESLNENAQSHSSGERSRMEEVKRNNNAGKRRGRRKGKG
ILVEKMQDMSNNSEVSPACSASSSSERSLVFPRRPGYGQLGTKCLVKANHFIAELSERNL
SQYSVRITPEVKCTRLNKAIMAELVKLHKDADLGKRIPVFDGRRTLYTAGLLPFNSKEFT
ITLGDDDEWIGITKEREFAVTIKFISQANMLQLRELLSGKHVDNPPQALKIIDIVLRELA
SQRYISVGRFFYSPNIKKPQTLGNGLQSWRGFYQSIKPTQMGLSLNIDMSTTAFIEPLPV
VEFVAQVLGKDVSSRPLSDADRIKVKKALRGVKVEVTHRGNIRRKYRISGLTSQPTRELI
FPVDEEKNMKSVIEYFQEVYGFTIQYPHLPCLLVGSQKKVNYLPMEACKILEGQRYTKRL
DEKQITSLLKSSCQRPREQEMDILQTIRQNGYKQDPIAKEFGINIDDKLASVEARVLPAP
WLKYHDAGKEKECHPHLGQWNMLNKKVINGSTVNHWACINFSCNVQENAARGFCHQLAQM
CQVSGMEFNCEPVIPVYYARPDQAKKALNYVYNAAANKLGGKELELLIAILPDNNGSLYG
TLKKICETDLGMISQCCLTKHVLKISKQYLSNVSLKINVKMGGRNTVLLDALRWKIPLVS
DIPTIIFGADVTHPESGEDCSPSIAAVVASQDWPEVTKYAGLVCAQPHRQELIQDLYRTW
QDPQRGTMSGGMIRELLLAFKKATGQKPLRIIFYRDGVSDGQFYQVLLYELDAIRKACAS
LEPGYQPPVTFIVVQKRHHTRLLPNNHNDRNHTDRSGNILPGTVVDTKICHPTEFDFYLC
SHAGIQGTSRPAHYHVLWDENNFSADEMQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAY
RARFYVEPDSRDNGSMRSTRATNGSVNVRPLPALKEKVKNVMFYC
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaatggcaaatgaaattagactttgagcaaaagcatatggtttcaagaactcct
ttacaagagtcgttgaatgagaacgcgcaatcccatagtagtggagagcgtagtagaatg
gaagaagtcaagagaaataataatgcagggaagagaagaggtaggaggaaagggaaagga
atattagtcgaaaaaatgcaggatatgagtaataactctgaggtttcccctgcttgttct
gcttcgtcatcatccgaaagaagtcttgtgttccctcgtaggccgggatatggacaatta
ggtaccaagtgtttggttaaagctaaccatttcattgctgaattatcagaaaggaactta
agccagtatagcgtaagaattactcctgaagttaagtgtacaagattgaacaaggctata
atggctgagttggttaaacttcataaagacgcggacttgggaaaaagaattccggttttt
gatggaagaagaacgctttacactgcagggttgctcccttttaactcgaaagagttcact
ataactcttggtgatgatgatgaatggataggaatcacaaaggagcgtgaatttgctgtc
acgatcaagttcatctcacaagccaacatgcttcagttacgcgaacttctttcagggaaa
cacgttgataatcctccacaagcacttaaaatcatcgatattgtgctaagggaacttgct
tctcaaaggtacatatccgttgggagatttttctattctccgaatattaaaaagccacag
acactaggtaatggtttacagtcttggaggggtttctaccagagcataaaacctactcag
atgggattgtctctcaatattgatatgtcaacaacagcattcatcgaaccactcccggtt
gttgaatttgttgctcaagttttgggaaaagatgtaagctcaaggccattgtccgatgca
gatcgaataaaggttaaaaaagctcttcgaggtgttaaagttgaagtgacacatagggga
aatattcgaaggaaataccgaatttctggattgacatcacaaccaacaagggagctaatt
tttcctgtcgatgaggagaagaacatgaaatcagtcatcgagtatttccaggaggtgtat
ggattcaccattcagtatcctcatctaccttgtcttctcgtgggaagccaaaagaaagtg
aattacttaccgatggaggcttgtaagatactcgagggacagagatacaccaaaaggttg
gatgagaagcagataacttcactgttgaaatcgtcatgccaaagaccacgagaacaagaa
atggacattttgcagaccattcgccagaacggatacaagcaagatccaattgcaaaggag
tttggcatcaatattgacgataagcttgcatcagtggaagctcgagttctcccagctccg
tggttaaagtaccatgatgcagggaaggaaaaggaatgtcatccacatctaggccagtgg
aacatgttaaataagaaagtaattaacggaagtactgtaaaccactgggcttgcatcaac
ttttcgtgtaacgtccaagaaaatgcagcccgtggcttttgtcatcagcttgcccaaatg
tgccaagtctctggaatggaatttaattgtgagcctgtgataccggtttattatgcaaga
ccagatcaggcaaagaaggcattgaattatgtatacaatgctgctgctaacaaacttgga
ggaaaagaattggagttactaattgccattctacctgacaacaatggttctttgtatggt
actctgaagaaaatttgtgagacggatttgggtatgatttctcagtgttgtcttacaaag
catgtgttaaaaatcagcaagcaatatctgtcaaatgtatcactgaaaataaatgtgaag
atgggaggaaggaacactgtacttttagatgctttgagatggaaaattcctctcgttagt
gatatcccaacgattatatttggtgctgatgtgactcatccggaatcaggagaagactgt
agcccatcgattgctgctgttgtagcatcacaagattggccagaagttactaaatacgcc
ggtttagtatgtgctcaacctcatagacaagaactcattcaagatctttaccggacttgg
caagatcctcaacgaggaacaatgtctggagggatgattagagaacttctattggcgttc
aagaaagccacaggacagaaaccactgagaataatattctacagggatggtgtaagtgac
gggcaattttatcaggttctactttatgaactcgatgcaattcgtaaggcttgtgcatca
cttgaaccaggttaccaacctccggtaaccttcatagtcgttcaaaaacgtcaccacaca
cgtcttttgccaaataaccacaacgacagaaatcacactgacaggagtggaaacatccta
cctggtactgtggtggatacaaaaatatgtcatccaactgaattcgatttttacttatgc
agtcatgctggaattcagggaactagtcgtcctgcacattatcacgttctctgggatgaa
aataatttctccgcggatgaaatgcagtctttgacaaacaacctttgttatacatatgct
cgatgcactcgttctgtttcagtagttcctcctgcatattatgctcatttggcggcctat
agagcacgtttctacgtggaacctgactcacgtgacaatggttcaatgcgtagcacacgt
gcaacgaacggttctgtcaacgtccgaccacttccagcattgaaagagaaggtgaagaat
gtgatgttctattgctag
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