Solanum stenotomum: 125862855
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Entry
125862855 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125862855
KO
K14416
elongation factor 1 alpha-like protein
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125862855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125862855
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125862855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
Zn_ribbon_RanBP
GTP_EFTU_D2
GTP_EFTU_D3
MMR_HSR1
GTP_EFTU_D4
Vps36-NZF-N
DZR
G-alpha
Motif
Other DBs
NCBI-GeneID:
125862855
NCBI-ProteinID:
XP_049398937
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Position
4:16009347..16025014
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AA seq
658 aa
AA seq
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MPRKVNYGVDYEEDFYDYEDYNYDYDDGYEYAEKNGRAPETNTKQELVKVGIWRCSICTF
DNRASMNVCDVCGNPKQEPVKAGVWCCPICTFDNEDTTNLCDMCGVLRNPLIKGCGGGGG
KASAATSNKVVQSNVLSSKKEIAGEVKKKLVSEEPTSSSTSTAKVRCDDMKDRGSSIETR
GNHDGMSNVSNMSVSSNSHNVESRIATSRSQSKPQKIVCTGQLEDKLNQLNLAIVGHVDS
GKSTLSGRLLHLLGQISQKEMHKYEKEAKQQGKGSFAYAWALDESAEERERGITMTVAVA
YFNTKSYRVVLLDSPGHRDFVPNMISGATQADAAILVVDASIGAFEAGIDVSGGQTREHA
QLIKSFGVDQIIIAINKMDAVGYSKERFDTIKNQLGTFLRACKFKDSSVLWIPLSAMQNQ
NLVTSPSDARLLSWFQGPCLLDAIDSLQPPQRDYSKPILMPICDLVKLPSQGQVSVCGKL
ETGALQTGDKVLVMPSREMATVRSLEHNSQVCNSAKAGDNVTVNLQGIDVNRVKAGDVLC
HPEYPIDVTNHLELKILLLDIAVPILIGSQLEFHVHHVKEAARVVRILSLLDPKTGKETK
KSPRCLLAKQNAIIEVVLQGMICVEEHSKCKGLGRVSLRASGRTIALGLVTRVLEKKE
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaggtaaattatggagttgattatgaagaagacttttatgactatgaagat
tacaattatgactatgacgatggatatgaatatgcagagaaaaatggaagggcaccagaa
acaaatacaaagcaggaattggtcaaggttggcatctggcgttgttccatttgcacattt
gataacagagctagtatgaatgtgtgtgatgtatgtggaaatcccaaacaagaaccagtt
aaggctggggtgtggtgttgtcccatttgcacatttgataatgaagataccacaaattta
tgtgatatgtgtggggtcctacgtaacccattgatcaaaggttgtggtggtggcggtggc
aaagctagcgcagctactagcaacaaagtcgtacagtcaaatgtcctatcaagtaaaaag
gaaatagctggtgaagttaaaaaaaaattggtttctgaagagcctactagttcttccaca
tcaacggcgaaggttagatgtgatgacatgaaggatagaggttcttctatagaaactaga
ggaaatcatgacggcatgagcaatgtgagcaatatgtctgtatcatcaaattctcacaat
gtggagagtagaattgcaacttcaagatcacagagtaaacctcagaaaattgtatgcact
ggtcaattagaagacaaattgaaccagctaaatcttgcaattgttggccatgttgattct
gggaagtcaacactatcaggaagactactacaccttttggggcagatatctcagaaggaa
atgcacaaatatgaaaaagaggccaagcagcaaggaaaagggtcctttgcttatgcctgg
gcattggatgagagtgctgaggaaagagagaggggaataactatgacagtggctgttgcc
tactttaacacaaaaagttaccgtgttgtactgcttgattccccaggccatagagacttt
gtcccaaatatgatatcaggtgcaacacaagcagatgctgcaattctcgtagttgatgct
tcaataggtgcttttgaagctggcattgatgttagtggaggtcagacaagggagcatgca
caacttatcaaaagctttggggtggaccagataataattgctattaacaaaatggatgca
gtgggatactccaaagaacggtttgatacaattaagaatcaactaggaacatttcttcgt
gcttgtaagtttaaagattcatcagtattgtggattcccctgagtgccatgcaaaaccaa
aatttggtgacaagtccttctgatgcaagattgttgtcctggtttcaaggtccatgcctt
ttagacgcaatagactctctccaacctccccaaagagattactcaaagcctatattaatg
ccgatatgtgatctcgttaaattaccctcacaaggacaggtgtcagtatgtggaaagttg
gagacaggagctcttcaaactggagataaggttctagttatgccatcaagagaaatggca
acagtgcgttctttggaacataattctcaggtctgtaacagtgcaaaagccggagacaat
gtcactgttaatctacaaggtatagatgtgaatcgtgtaaaggcaggggatgtgctgtgc
caccctgaatatcctattgatgttacaaatcatttggaactgaagattcttctcctggat
attgctgttccaattttaattggctctcagttggaatttcatgtacaccatgttaaggag
gctgcaagagttgtgaggattttgtccttgcttgatccaaagactggaaaggagaccaag
aaatcacctagatgtcttctagcaaagcagaatgctataattgaggtagttttgcaaggg
atgatttgcgttgaagagcattctaaatgtaagggtcttggaagggtgtccctcagagca
tcaggaagaaccatcgctcttggtcttgtgactcgagttctagagaagaaggaatag
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