Solanum stenotomum: 125862956
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Entry
125862956 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125862956 isoform X1
KO
K11797
PH-interacting protein
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125862956
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125862956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Bromodomain
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_SPT8
VPS8_N
Auxin_resp
WD_LRWD1
Agenet
Motif
Other DBs
NCBI-GeneID:
125862956
NCBI-ProteinID:
XP_049399043
LinkDB
All DBs
Position
1:complement(48213225..48230482)
Genome browser
AA seq
1699 aa
AA seq
DB search
MSFRKYILPCDAPSGSMKSLNISGKANQNSQPSDPQRSTEADVDIDMGEVYFLIMHFLSA
GPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGAPSGDENDDGRSFPLSYNRLVERYSHVG
KDHLVKLLKQLLLSVKAPPLGMVDGNTINAAAVPTLLGTGSFSLLSSDQDQRNDEVKPPG
HLRWPHMLADQLRGLSLREIGGGFSKHHRAPSIRAACYAIAKPSTMVQKMQNIKKVRGHR
NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVNSNNTLVASA
SNDCIVRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSIYQLLSSSDDGTCRIWDARYSQ
FNPRLYIPKPPETVAGKNTGPSSSTVLQSHQIFCCAFNNSGTFFVTGSSDTCARVWNACK
SNSDDSEQPNHEIEILSGHENDVNYVQFSGCAAASRFSSTDASKDDCGPKFKNSWFNHDN
IVTCSRDGSAIIWIPRSRRSHGKGGRWQKAYHLKVPPPPMPPQPPRGGPRQRILPTPRGV
NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLDVHPSNPRIAMSAGY
DGKTIVWDIWEGAPIRTYEIGRFKLVDGKFSPDGTSIILSDDVGQLYILNTGQGESQQDA
KYDQFFLGDYRPVVQDTNGNVLDQETQLAPYRRNMQDLLCDAGMIPYPEPYQSMYQRRRL
GALGIEWRPSSFRFSIGTDFNMDQPYQTFPIIDLEMLIEPLPGFVDAMDWEPEIEIQSDE
SDSEYHVTEEYSSGKEHGSFCSDASANPENSDEDSEAEDNQNDALRRSRRKKQKEEAEVM
TSSGRRVKRKNLDECDNSSHRINRSRKSRHGRKAKKKSSSKSLRPQRAAARNALHLFSRI
TGTSTEGEDEYGSESDSSDSESTLQDSNNGNEDSDVSLSSERLGHSKGKEICVDHSDETN
KLQPFPNSNLNGGIRRRLVLKLPNRDSSKYGPPMNYKPGLAGPSLVPEEGAEVSQNYFGC
EDYNLRDANGDIREKSEIDQPTKIENHLDLLEGCKDGNIKWGGVKSRSTKRSRMGELFPS
GSETGPSSFAEGNILKENVVNGHPMLEKENHSVPPCSGIQNETNGIIHVNENHCQDSMQE
TENVKLLDGTDSDHPCKQNATPVPMRLRIRSKTLFGHPDNCDMIDAKTSLEDSGCTACDT
VSECQDTEKVLSSEAPTEEDSRTPTLDDGDHEKKLDSDNIGGSSGTELQAPQPVRSHDMF
TAVYRRSKFGRSRSGRESVSGSMEATTSNVGSHSLAEGSEAVIEGVRRTRSIRLRPTTCD
VNPAQNNDRFMQSHDGSEGTSVEKTAGNNDDESSFEEKLLGSASSVGLRSTRTRRASYSA
REPSPPDRKKSYQAAKSSWLMLVAHEEGSRYIPQRGDEIVYLRQGHEEYISQNSLRDLGP
WKTIKGKIRAVEFCLIETLEFKTRPGSGESCAKMTLKFLDPASDVVGKSFQLTLPEVTGF
PDFLVERTRYDAAIERNWTSRDKCQVWWKNEGEEDGSWWEGRILNVQAKSHEFPDSPWER
YIVRYKSDPSETHQHSPWELYDADTQWEQPRIDDETREKLMSAFTKLEQSGNKAQDYYGV
EKLRQVSHKSNFINRFPVPLSLETIQARLENNYYRSLEGMKHDIEVMLSNAESYCGRNVE
LTTRVRHLSEWFRRTLSSL
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttcggaagtatattctcccttgtgatgcaccatctggaagtatgaaatcattg
aacatatctggaaaggctaatcaaaattctcagccatctgatccacaaagatcaacagag
gctgatgtggacatcgacatgggtgaggtctattttttgattatgcatttcctatcagct
gggccatgtcacagaacttatgggcaattctggaatgagcttctggagcatcaactttta
ccccgtagataccatgcttggtattcaaggagtggagcaccaagtggtgacgaaaatgat
gatgggaggtctttcccattaagttacaatagattggtggaaaggtactctcacgtggga
aaggatcacttggtgaagctcttaaaacaattattgttgagtgtgaaagccccccctctg
ggtatggttgatggcaatacaattaatgcagcagctgttccaactctgctaggaactggt
tccttttcacttctcagcagtgatcaagatcagaggaatgatgaagttaagcctccaggt
cacttacgttggccacacatgctagcagatcagctgcgtggactaagtttgagagaaatt
ggtggtggattttctaaacaccatcgtgcaccatctatccgtgcggcgtgttatgccatt
gcaaaaccatccactatggtgcagaaaatgcaaaatattaaaaaagttcgaggacatagg
aacgcagtttattgtgcaatatttgatcggtctgggagatatgttataactggctcagat
gaccgacttgtaaagatttggtcaatggaaacagcatattgcttggccagctgtcgtggg
catgaaggtgatatcacggacctagctgtcaattccaacaacactttagtagcttctgct
tcaaatgattgcatcgtcagagtttggcgcttgcctgatgggctgccgatttctgtgttg
cgtggtcatactggagctgttacggcaatagcatttagtccaagacccagttctatttat
cagctcttatcgtcatctgatgatggaacatgccggatttgggatgctagatattcccag
tttaatccacgcctatacattcccaaaccgcctgaaacagttgctgggaagaacactggt
ccttcatcaagcactgttttgcaaagccaccagatcttctgttgtgcattcaataacagt
ggaacattctttgtaactggaagctcagacacttgtgcaagagtctggaatgcttgtaaa
tctaattctgatgattcagagcagcctaatcatgagatagagattttatctggtcatgaa
aatgatgtaaactatgtgcaattcagtggttgtgctgctgcgtccagattttcctccact
gatgcatcaaaggatgactgtggccctaagttcaaaaactcatggtttaatcatgataac
atcgttacttgttcccgtgatggtagtgcaatcatatggatcccgagatcacgtagatcg
catggaaagggtggacgttggcagaaagcgtatcatttgaaagttccaccaccgccaatg
ccacctcaacctcctcgaggcgggccacgtcaaagaattcttccaactccacgtggtgtt
aatatgattgtctggagcttagataaccgttttgtccttgctgctatcatggattgcaga
atatgcgtgtggaatgctgttgatggtagcttagtgcattctttgacgggtcatactgaa
tctacctatgtacttgatgtccatccttctaatcctagaatagccatgagtgctggttat
gatgggaaaacaattgtctgggatatatgggaaggtgcacctattcgaacatacgaaatt
gggcgattcaagctagttgatggaaaattttctccggatgggacatcaataatactttca
gatgatgttggccaattgtacatattgaatactgggcaaggagaatcccagcaggatgcc
aagtatgaccagttttttcttggagattatcgccctgtcgttcaggatacaaatggaaat
gtccttgaccaggaaacacaacttgctccgtacaggaggaatatgcaagatctcctttgt
gatgcaggcatgattccatatccagagccataccagagcatgtatcaacgaagacggtta
ggagctttgggaatcgagtggagaccctcgtcattccgattttctattggaacagacttc
aacatggaccagccgtaccaaacttttcccatcatagacttggaaatgctgattgaacca
cttccaggatttgtggatgcaatggattgggaaccagaaattgagatacaaagtgatgaa
tcagattcagagtatcatgtaactgaggagtattcttctggaaaagagcacgggagtttc
tgttctgatgcttctgcaaatccagaaaatagtgacgaagacagtgaggctgaagacaat
caaaatgatgcgcttcgtagatcaagaaggaagaaacagaaagaagaagctgaagttatg
acatcctctggaaggcgtgtaaaaaggaagaacttggatgagtgtgacaacagttctcat
aggatcaatcgctctaggaaatcaagacatggtcgaaaagcgaagaaaaagtcttcatca
aaatctttgagaccccagagagctgctgctcgcaatgcccttcatttgttttccagaatt
acagggacatctactgaaggagaagatgaatatggttcagaaagcgattcatctgatagt
gagtccacacttcaggactcgaacaatggaaatgaagattcggatgtgtccttaagtagt
gaacgacttggacattcgaaggggaaagagatatgcgttgatcactctgatgaaacaaat
aagctccagccatttcccaactctaatctcaatggtggaattaggaggagattggtccta
aaactgccaaatcgtgattcaagtaaatatgggcctccaatgaattacaagcctggtcta
gctggtccatctttggtccctgaggaaggtgctgaagtaagtcaaaactactttggctgt
gaggattacaacctgagggatgctaatggtgacataagagaaaagagtgaaattgatcaa
cccacaaaaattgaaaatcacttggacctcttggaagggtgcaaagatggaaacatcaaa
tggggaggggtcaaatcccgctcaaccaagcgctctaggatgggagaattgtttccatca
ggctctgagacaggacctagctcatttgctgagggaaacattctgaaagaaaatgttgtt
aatgggcacccaatgcttgaaaaggagaaccacagcgttcctccttgttcagggatccaa
aatgaaaccaatggaattattcatgtcaatgagaatcattgtcaggattctatgcaggag
acagaaaatgttaagcttttagatggtactgacagtgatcatccatgtaaacaaaatgca
actcctgtcccaatgaggttgcgtattaggtcaaagactctttttggtcatcctgataac
tgtgacatgattgatgcaaagacttcattggaggattctgggtgcactgcttgtgataca
gtttctgaatgtcaggacactgagaaggtcttaagttcagaagcccccactgaagaagat
agcagaacaccaactttagatgatggagaccatgagaagaagttagattcagataatatt
ggtggatcttctgggacagaattgcaagctccacagccggtgcggtcacatgatatgttc
actgctgtctatagaaggtcaaaatttggtcggagtagaagtggtagagaaagtgtcagt
ggaagtatggaagcgaccacttcaaacgtggggagccatagtctagctgagggatctgag
gccgttatcgagggagttcgaagaactaggtctattagattaagaccaacaacttgtgat
gtgaatcctgcacagaacaatgacagattcatgcagtcacatgacggttccgaggggacc
tcagtggaaaagacagcaggtaacaacgatgatgaaagttcgtttgaagagaagctactt
ggttcagctagttctgttgggttgcgttctacccgaacacggagagccagctattctgcc
cgtgaacctagtcctccagacagaaagaaatcataccaagcagcaaaaagctcatggttg
atgttggtagcccatgaggagggctcccggtatatacctcagcgaggggatgaaattgta
tacttaagacagggccatgaagagtacataagtcagaatagtttgagggatttaggcccc
tggaaaacaataaagggaaaaataagagcagtagaattttgtttgattgaaaccctcgag
ttcaaaacacggccaggttctggagaaagctgtgctaaaatgacactgaaatttttagat
cctgcttctgatgtggtggggaaatcatttcagttgacactgcctgaagtgactggtttc
cctgattttcttgttgaaagaaccagatatgatgctgctatagaaaggaactggacttct
cgggacaaatgccaagtttggtggaagaatgaaggtgaggaagatgggagttggtgggaa
ggtaggattctaaacgtgcaagctaaatctcatgaatttcctgacagcccctgggaaagg
tatattgtccgatacaagagtgatccatcggaaactcatcagcatagtccttgggaacta
tatgatgctgacacacaatgggaacaaccccgtatagatgatgaaaccagagagaagctg
atgagtgcgtttactaagctggagcaatctgggaataaagctcaggactattatggggtt
gaaaaattgagacaggtttcacacaagtcaaacttcattaacaggtttcctgttcccttg
tcacttgaaactattcaggctaggctagagaacaattactataggagtctggagggaatg
aaacatgacattgaggtgatgctctcaaatgccgagtcatattgtggaagaaatgtcgag
ttaacaacgagagtgagacatttgtctgagtggttcagacggacactctcatctttgtag
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