Solanum stenotomum: 125862976
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Entry
125862976 CDS
T08385
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2-like isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
sstn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125862976
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125862976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125862976
04121 Ubiquitin system [BR:
sstn04121
]
125862976
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125862976
Enzymes [BR:
sstn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125862976
Spliceosome [BR:
sstn03041
]
Complex B
Other components
Prp19 complex
125862976
Complex C
Prp19-CDC5 complex
125862976
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
U-box type E3
125862976
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
125862976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_EML
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_DCAF4
U-box
WD40_like
Beta-prop_RIG_2nd
PROPPIN
Beta-prop_HPS5
PAS_11
WDR54
KNTC1_N
zf-Nse
Motif
Other DBs
NCBI-GeneID:
125862976
NCBI-ProteinID:
XP_049399065
LinkDB
All DBs
Position
4:complement(1413071..1420836)
Genome browser
AA seq
424 aa
AA seq
DB search
MNCSISGEVPEERVVSTKSGLLFEKRLIERHISDYGKCPVTGEPLTMDDIIPVKTGKIVK
PRPVQAASIPGMLGIFQKYWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARELLAQAERQVPMAATTSAANGAALSYGKRAAEEEEMDPGSKKIRPGISGDVIKE
LQDCNAALSQQRKRRQIPATLAPVDALKRYTQLNSYPLHKTNKPGILSLDIHYPKDIIAT
GGVDSTAVVFDLPSGQIVSTLSGHSKRVTSVRFAAEGELVVTGSADKTVRVWQNSENGNY
DCRHTLKDHGAEVQAVTVHATNKYFVSASLDGTWCFYDLASSLCLAQVADASESEGYTSA
AFHPDGLILGAGTSGAQVKIWDVKSQANVARFEGHVGAVTAISFSENGYFLATAAHDSVK
LWDL
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatttccggcgaggtaccggaagaacgagtggtttcaacgaaatccgga
ctactttttgagaagcgtttaattgaaagacacatctcggattatggtaaatgtccggtt
actggagagccactgacaatggatgacattattccagttaaaactggcaagatagtgaag
ccccgacctgtgcaggctgccagcattcctgggatgctgggaatctttcagaagtattgg
gatggtctgatgctatccaattttgctttggaacagcaattacatactgcaaggcaagaa
ctgagtcatgctctatatcagcatgatgctgcttgccgggtaattgctaggctgaaaaag
gaaagagatgaggcaagagaattgcttgcacaggctgaaagacaagtacccatggcagca
actacatcagcagctaatggtgctgctctaagctatggcaaaagagctgcagaggaagag
gagatggatcccggcagtaagaaaattcgcccaggaatatcaggcgatgttattaaagag
cttcaggattgtaatgctgctctttcacaacaaaggaaaaggcgacagatacctgcaact
ttggctcctgtggatgctcttaagagatatacccaactgaatagttatcctcttcacaaa
accaacaaaccaggcatcttgtctctggatatccattatcctaaggacatcattgctact
ggtggagttgattcaactgctgtggtctttgatctaccttcaggacagattgtatcgaca
ctaagtggtcactcaaagagggtaactagtgtcagatttgctgctgagggtgaactagta
gttactggctctgcagataagacagttcgtgtgtggcaaaactctgaaaatggaaattat
gactgtaggcatactttgaaggaccacggtgctgaggtgcaggctgtcaccgtccatgca
accaataagtactttgtgtctgcttctcttgatggcacatggtgcttttatgatcttgca
tctagtttatgccttgctcaggtagcagatgcttcagaatctgagggctacacatctgca
gcttttcaccctgatggtctgatccttggagcagggacttcaggggctcaggtcaagata
tgggatgtaaaaagtcaggcaaatgttgcaagatttgaaggccatgttggtgcagtaact
gcaatttccttctcagaaaatggttatttcttagcaactgcagctcatgatagtgttaaa
ctttgggatttatga
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