Solanum stenotomum: 125863060
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Entry
125863060 CDS
T08385
Name
(RefSeq) zinc finger CCCH domain-containing protein 16 isoform X1
KO
K14321
nucleoporin-like protein 2
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125863060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125863060
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125863060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf-CCCH_4
zf_CCCH_4
zf-CCCH_2
zf-CCCH_DUS3L
Torus
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
125863060
NCBI-ProteinID:
XP_049399159
LinkDB
All DBs
Position
4:complement(65774840..65790158)
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AA seq
486 aa
AA seq
DB search
MPPRKEPCRNFMRGSCQYGERCKFLHAAQQQPKPNPFGFGSQSSNFQNTNMQQTKSSPFG
FGVQSNSQPRGSDDLGPKSSPFGFGVQSNSQPRGSDDLGPKSNPFGFGVQSNSQPRGSND
LGLKQNQYKPFENKWTRSATTNSSSSRQTDNQPVAPNHTCTDAESCRRQIVEDFNNEKPL
WLLTCYGHRKNGPCDIIGDVSYEELRAAAYDDAKRGQSLMSIVERERSLVNSKVAEFENL
LRNPYASTSTSAPNAQSPFPGATPSTSLSAQSPFPGAAPSASSPFPGAAPSASSPFPGAA
PSASLSTQSPFPGAAPNALSSAQSSFPPSASSFSQLGTILNTGTSTPPTSAFGQPSLPGN
SFKTSNSSGANAFSFGNTSASGSFGFGTQVSTQSYQNPSTPSNIFASSGRNLFSTSTTSP
HFANTSGGQFPTPSQGGFPVTASPVSINLTNTASTEDFSGDNSIWTKKEWKIGEIPEEAP
PDRYVF
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgcctccaaggaaagaaccctgcaggaattttatgcggggcagctgtcaatatggtgag
cgttgtaaatttcttcatgctgcccaacaacaaccgaagccaaatccatttgggtttggc
agccaatcctctaattttcagaatacgaatatgcagcagacaaagtccagcccttttggt
tttggtgttcagagcaactcccagccaagagggtccgatgatttggggccaaagtccagc
ccttttggttttggtgttcagagcaactcccagccaagagggtccgatgatttggggcca
aagtccaacccttttggttttggtgttcagagcaactcccagccaagagggtccaatgat
ttggggctcaaacagaatcaatacaagccttttgaaaacaagtggactcgctctgcgact
accaacagttcttcatcgcggcaaaccgacaatcagcctgtagcacctaatcacacctgc
acagatgctgagtcatgcagacgccagattgtggaagattttaataatgagaagccattg
tggctgcttacctgctatggtcatcgtaaaaatggtccatgtgatattattggtgatgtt
agctatgaagagctgcgagcagcagcatacgatgatgcgaaacgtggacagagcttgatg
tctattgttgagagagagaggagcctggttaattctaaagtagctgaatttgaaaatcta
ttgcgaaatccttatgcatctacatcaacttctgctcctaatgctcaaagtccttttcct
ggtgccacaccaagtacctcattgagtgctcaaagtccttttcctggtgctgcaccaagt
gcctcaagtccttttcctggtgccgcaccaagtgcctcaagtccttttcctggtgccgca
ccaagtgcctcattgagtactcaaagtccttttcctggtgctgcaccaaatgcattgtcg
agtgctcaaagcagttttcctccttcagcctcaagttttagtcagttgggaaccatactg
aatacagggacatcaactccaccaactagtgcatttgggcaacccagtctccctgggaac
tcttttaagacatcaaattcgtctggggcgaatgctttttcatttgggaatacatcagca
tcaggttcctttggcttcggaacccaagtctctacccagtcatatcaaaatccttccaca
cccagcaatattttcgcaagctctgggaggaacttattttccacctctacaacctcacca
cattttgctaatacctctggtggccaatttcctactccttctcaggggggttttcctgtt
acggcgtcccctgtcagtatcaacttgacgaatactgcatcaacagaggacttcagcggg
gataacagcatttggacaaagaaggaatggaaaattggggagattccagaagaagcaccc
ccagacagatatgttttctag
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