Solanum stenotomum: 125863937
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Entry
125863937 CDS
T08385
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4b-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
sstn
Solanum stenotomum
Pathway
sstn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125863937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125863937
03036 Chromosome and associated proteins [BR:
sstn03036
]
125863937
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125863937
Coactivators
SAGA/TFTC/STAGA complex
125863937
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
125863937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Fungal_virus_P2_N
Motif
Other DBs
NCBI-GeneID:
125863937
NCBI-ProteinID:
XP_049399862
LinkDB
All DBs
Position
1:85697398..85720882
Genome browser
AA seq
934 aa
AA seq
DB search
MDPSIMKLLEEDEDETMHSGADVEAFTAALNRDIGGDNSQSQPSDSDSVPLSQGSSYTSN
QFAPWQTANHDENASRCSLQDSETMQPKEENLSDMQLKRLDTDSQNQQQKNDSSQEINSL
PLQHISQDSYQTTEVEQDTLHSSRAVNMQNPEKNTQNPESPHLNLQGANNLQSMQSLTTG
TSGLPRVATMAGNQSESATGSSSQAAMNIAKQGKQVPFAMLFPHIQPQLDKDRAAQLQTL
YVKLKKNEISKESFVRNMRSIIGDQMLKMAVYKFQSQASKNSQSVPGQFPQSQASQQQHS
LMPADDSSNMAIESKAQKLHEVENQADLRGAQGSQMPSSSLTAVKQERDHTPFPIQGLNR
QLQQHLHFSQVSFPTFANAGXNYSAYSASNVNSSTTQPLKQQSDDAQMRQISVQQNRNAT
QFGVPTQAMGIMSAPKFEKQNTFGEAKRLPGGGLNISSTSRIHQTSVQWQPSANKEQKSI
LSSPMTNPKPEPIDHFHDQLQRSQLSPFSSVQVDQGNSTSESSRDESIEQTSRIGLSSTT
SMKPSNSASSSMSSHMDTSTLLSSRTLSVTSPLGPGNNGKTPVKKPSIGQKKPLDVLGSS
PPPSGKKQKVSGGFLDQSIEQLNDVTAVSGVNLREEEEQLFSGPKEDSRVSEASRRVVQE
EEERLILQKIPLQKKLTEIMAKCGLKNMSSDVERCLSLCVEERMRGLISSLIRLSKQRVD
IEKSRHRTIVTSDVREEIMSINRKAREEWEKKQADVEKLQKANEPEGSIGVDGDKEKDEG
RGKSIKVNKDEDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREGGGDVASGSQP
GKDVTRKNISAPTRSSRDPQEAEKRIQSSAIATPGAVRRAGRTQGIITQTRIARSITVKD
VIAVLEREPQMSKSTLIYRLYEKARSNASSAESS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggatccgtctatcatgaagctccttgaagaagacgaggatgaaacaatgcattcgggg
gcagatgtggaggcattcactgctgccctaaacagggatatcggtggagataattcacaa
tctcagccttcggattccgatagcgtaccattgtctcaaggaagcagttatacctcaaat
cagtttgccccatggcaaactgctaaccatgacgaaaatgccagtcgttgtagccttcaa
gattcagagaccatgcagccaaaggaggaaaatttgtctgatatgcagttgaagagactt
gatacagattctcagaatcagcagcaaaaaaatgattcatcacaggagatcaattccctt
cctttgcagcatatatcccaggacagttatcaaaccacagaggttgaacaggacacactt
cattcttctagagcagtgaatatgcagaatcctgaaaagaatacgcaaaatccagaatct
ccacatctaaatttacagggagcaaataatctacaatccatgcagtctttgacaacagga
actagtggtctgccacgtgtggcaacaatggcaggtaatcagtcagaatctgcaactggg
tcgagcagccaagcagcaatgaatatagctaaacagggaaaacaagttccttttgccatg
ctttttcctcacatacaaccccaacttgataaggacagggcagcgcaactccagacactt
tacgttaaactcaaaaaaaatgaaatttccaaggaaagttttgtaaggaacatgagaagt
ataattggtgaccagatgctcaaaatggctgtatataaatttcaatctcaggcatcgaaa
aactcacagtctgttcccggtcaatttcctcagtctcaggcttcacagcagcaacattcg
cttatgccagccgatgattctagcaatatggcaattgagagtaaagctcaaaagttgcac
gaggtggaaaaccaagccgatctgcgtggagcccaaggaagccagatgccttcttctagt
ttgactgctgtaaaacaagaaagggatcacacaccatttccaattcagggacttaacaga
caactgcaacaacatttacacttctcgcaggtatcttttcccacatttgcaaatgcaggg
nacaattacagtgcatattctgcatctaatgtcaactcttcaacaacacaacctcttaaa
cagcaatctgatgatgcacaaatgagacaaatttcagttcaacagaacagaaatgcaact
cagtttggagtgccaacacaagccatgggaataatgagtgcccctaagtttgaaaagcaa
aacacttttggcgaagccaaaagattacctggtgggggtcttaatatttcaagtacttca
agaattcatcagacctcagttcagtggcaaccctctgccaataaagagcagaaaagtatt
ctttcatcaccaatgaccaatccaaagcctgaaccaattgatcatttccatgaccagcta
caaagatcccagttatcgcccttctcctctgttcaagtggatcaaggaaattccacttcg
gaaagttcaagggatgaatctattgaacagacctccagaattggtttatcatcaacgact
agcatgaaaccttcaaattcagcctcgtcttccatgtcatctcatatggacactagcaca
ttgttaagttctcggacactttctgtgacatctccacttgggccaggaaacaatggaaag
actcctgtgaaaaagccttccattggacagaagaagccccttgatgtgctaggttcctca
cctccaccttcgggaaagaagcaaaaggtgtcgggaggttttttagatcagagcattgaa
caacttaatgatgttactgctgttagtggagttaatctaagggaagaggaagagcaactg
ttttctgggcccaaggaggacagtcgagtttctgaagcatctcgtcgagttgtgcaagaa
gaagaggaaaggctgattttgcagaaaattccacttcagaagaaattgacagaaatcatg
gcaaaatgtggtttaaagaatatgagcagtgatgtggaacgatgcttgtcgttgtgtgtg
gaggaaagaatgcgtggactcataagtagtctcatcagactgtcaaaacagagagttgac
attgagaagtcaagacacagaacaattgtcacctcagatgttcgtgaagaaatcatgtca
atcaatcgaaaagcccgggaagaatgggaaaagaaacaggctgatgtggaaaaactccaa
aaggcaaatgaacctgaaggtagtattggagttgacggtgataaggagaaggatgagggt
cgcgggaaatcaataaaggtaaacaaggacgaagatgataagatgcgaactacagctgca
aatgttgctgctcgagctgctgttggaggggatgacatgttgtcaaagtggcaattaatg
gctgagcaggcaagacaaaagcgtgaagggggaggtgatgtggcttctggttcacagcct
ggtaaagatgtgactaggaagaatatatcagctcccacaaggagctcaagggacccccaa
gaagctgagaaaaggatccagtcatctgcaatagccacacctggtgctgtgagaagagcc
ggaagaactcaagggatcataacacaaactaggattgctcgcagtattactgtaaaagat
gtgatcgccgtcctagaaagagaacctcaaatgtctaagtctacactgatataccgcttg
tatgagaaagctcggtccaatgcttcatcagctgaatcatcctga
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