Solanum stenotomum: 125864284
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Entry
125864284 CDS
T08385
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
sstn
Solanum stenotomum
Pathway
sstn03022
Basal transcription factors
sstn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125864284
09124 Replication and repair
03420 Nucleotide excision repair
125864284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125864284
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125864284
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125864284
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125864284
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
Motif
Other DBs
NCBI-GeneID:
125864284
NCBI-ProteinID:
XP_049400152
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All DBs
Position
5:1877534..1888478
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AA seq
599 aa
AA seq
DB search
MADGKLVKRAKYKTSVKVPGVPGVLKLTKERFYFMPNDPTLTTKLNVEFKLIKGHKSSKE
CSSKQALLNLTQAQGGNYLFEFDSFPDRDQCRDFVASAIAACGEIGKATSEKPAVPHDEQ
LSATEMGRRIKLLQENSELQKLHRQLVIGGILSEAEFWAARKKQLEQSENKKPNQRVALK
NDMWSVKPLSDGQTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKMSEKEFWTKYSRA
EYLHSTKNIVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRRVDPTLDMEADEGDDYMHL
PDHGLPQGETKEILEPQYEPFKRSFSQYLNQHAAVVLRGRLIDVELGDTRSVAEAFTRTY
QAEQATEVSDENAYRERVKKVSRVAEIEDLQGPRDPPVALLSIKDPRDYFDSQQANAVKA
LGDAETGIRQLKFSVSKEEAFCSLKDSISEINSQGLIEPIISPEVALKVFNGLSQNISST
KYHLGKNPHESVLDQLPSATKNELLLHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDAM
SQIYPKLQEIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDADIQKRSAKSGERPNGFV
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggccgatggtaagttggttaagcgtgccaagtacaaaacttcagtcaaggttcctggc
gtccctggcgttttgaaattgaccaaggaacggttttattttatgccgaatgacccaaca
ttaacgacaaagcttaatgtggagttcaagttgattaaaggccacaagtcttccaaggag
tgttcaagtaagcaggctctacttaatcttacacaagctcagggtggaaattatcttttt
gaatttgatagcttccctgaccgtgaccagtgtcgggactttgttgcctcagcaattgca
gcttgtggggaaatagggaaagctacttccgaaaaacctgctgttccacatgatgagcaa
cttagtgcaacagaaatggggcgtcggattaagttactgcaggagaacagtgagttgcag
aaactccacaggcaattggtcattggaggtattctatcagaggctgaattttgggctgct
aggaagaagcagttggaacagagtgaaaataagaagccaaaccagcgggtagctttaaaa
aatgacatgtggagtgtaaaaccattatctgatggccagacgaacagagttacatttaac
ttgactccagaggttattcatcagatatttgcagagaaaccagctgtccgccaagcatat
ttgaagtttgttcctggcaagatgtcagaaaaagaattctggactaaatattcaagagct
gaatacctccacagtacaaaaaacattgttgcagctgctgcagaggctgctgaagatgag
gagcttgcagttttcttgaagcaagatgatatgttagtatctgaagctcggaggaagatc
agaagagtggatccaactctggacatggaagcagatgaaggtgatgattatatgcatctc
ccggatcatgggctacctcagggtgaaactaaggagattctagaaccacagtatgaacca
ttcaaaaggtctttctcgcaatacctcaatcagcatgcagcagtggttcttcgaggaaga
cttatagatgttgagctgggtgatacaagatctgttgctgaagcattcaccaggacatat
caggctgaacaagctactgaagtgtctgatgagaatgcatatagagaacgcgtaaaaaaa
gtttctcgagtagctgagattgaggatcttcagggacctcgagacccaccagttgcattg
ctaagtatcaaggatccccgagactactttgattctcagcaagcaaatgcagtaaaggct
ttgggagatgctgaaacagggataagacagttgaaatttagtgtgagcaaagaagaagcc
ttttgctccttgaaggactccatctctgagataaattctcaaggattgattgaaccaata
attagtcccgaagtagctctcaaggttttcaatgggctaagtcagaatatctcaagtaca
aaatatcatctgggaaagaatccccatgagagtgtgttagatcagttgcctagtgcaacg
aaaaatgagctattacttcattggacatcaattcaggaattattgaagcacttctggtca
tcttatccaataacgacaaaatatttctacgccaaggtgactaggttaaaggatgcaatg
tctcagatatatcccaagttgcaggagatcaaggaatctgtgcaatcagatgtcagacac
caagtttcccttcttgtacagccaatgcttcaggctttggatgctgcctttgcccattac
gacgcagatatacagaagagatctgccaaaagtggtgagagaccaaatggatttgtttag
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